Organism : Geobacter sulfurreducens | Module List :
hypothetical protein (VIMSS)
Functional Annotations (1)
Regulation information for GSU1057(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Functional Enrichment for GSU1057
Module neighborhood information for GSU1057
|Gene||Common Name||Description||Module membership|
|GSU0122||GSU0122||nickel-dependent hydrogenase, large subunit (VIMSS)||21, 157|
|GSU0218||GSU0218||conserved hypothetical protein (VIMSS)||21, 266|
|GSU0265||GSU0265||membrane protein, putative (VIMSS)||21, 186|
|GSU0287||GSU0287||HD domain protein (VIMSS)||49, 133|
|GSU0428||GSU0428||lipoprotein, putative (VIMSS)||21, 278|
|GSU0433||GSU0433||clpB protein, putative (NCBI)||21, 96|
|GSU0493||ndh||NADH respiratory dehydrogenase (Regina ONeil)||133, 235|
|GSU0494||GSU0494||iron-sulfur cluster-binding protein (VIMSS)||133, 336|
|GSU0522||rhlB||ATP-dependent RNA helicase RhlB (NCBI)||81, 133|
|GSU0586||GSU0586||radical SAM protein, TIGR01212 family (NCBI)||99, 133|
|GSU0806||citG||ATP:dephospho-CoA triphosphoribosyl transferase (NCBI)||95, 133|
|GSU0837||GSU0837||response regulator (VIMSS)||21, 155|
|GSU0848||GSU0848||ferredoxin family protein, putative (VIMSS)||21, 189|
|GSU0849||GSU0849||conserved hypothetical protein (VIMSS)||21, 157|
|GSU0898||recQ||ATP-dependent DNA helicase RecQ (NCBI)||44, 133|
|GSU0923||loN-1||ATP-dependent protease La (NCBI)||20, 133|
|GSU0924||GSU0924||ABC transporter, permease protein, putative (VIMSS)||20, 133|
|GSU1015||GSU1015||hypothetical protein (VIMSS)||21, 189|
|GSU1049||GSU1049||conserved hypothetical protein (NCBI)||21, 272|
|GSU1050||GSU1050||sensory box histidine kinase (VIMSS)||21, 272|
|GSU1056||GSU1056||conserved hypothetical protein TIGR00149 (VIMSS)||21, 133|
|GSU1057||GSU1057||hypothetical protein (VIMSS)||21, 133|
|GSU1058||sucC||succinyl-CoA synthase, beta subunit (NCBI)||21, 133|
|GSU1415||GSU1415||response regulator (VIMSS)||21, 157|
|GSU1685||GSU1685||HD domain protein (NCBI)||21, 38|
|GSU1696||GSU1696||MoxR family protein (VIMSS)||65, 133|
|GSU1770||GSU1770||hypothetical protein (VIMSS)||133, 253|
|GSU2344||GSU2344||NADH-ubiquinone/plastoquinone family protein (VIMSS)||49, 133|
|GSU2349||GSU2349||hypothetical protein (VIMSS)||21, 45|
|GSU2512||GSU2512||hypothetical protein (VIMSS)||21, 180|
|GSU2701||GSU2701||ABC transporter, permease protein (VIMSS)||99, 133|
|GSU2713||GSU2713||conserved hypothetical protein (VIMSS)||4, 133|
|GSU2726||GSU2726||hypothetical protein (VIMSS)||133, 237|
|GSU2827||GSU2827||conserved hypothetical protein (VIMSS)||133, 235|
|GSU2935||GSU2935||cytochrome c family protein (NCBI)||45, 133|
|GSU2978||GSU2978||hypothetical protein (VIMSS)||133, 140|
|GSU2979||folK||2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase (NCBI)||133, 273|
|GSU3109||GSU3109||transcriptional regulator, IclR family (NCBI)||99, 133|
|GSU3332||GSU3332||cytochrome c family protein, putative (NCBI)||133, 256|
|GSU3415||GSU3415||radical SAM domain protein/B12 binding domain protein (NCBI)||21, 157|
|GSU3417||GSU3417||dioxygenase, putative (VIMSS)||21, 59|
|GSU3418||GSU3418||sigma-54 dependent DNA-binding response regulator (VIMSS)||21, 274|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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Identity of gene members in a module may help to identify potential interactions between different functional modules. Therefore, neighbor genes that share the same module(s) with gene under consideration are shown here. For each memebr, gene name, description and modules that contain it are listed.
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