Organism : Geobacter sulfurreducens | Module List :
Regulation information for GSU2512(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for GSU2512
|Gene||Common Name||Description||Module membership|
|GSU0105||GSU0105||cytochrome c family protein, putative (NCBI)||180, 181|
|GSU0122||GSU0122||nickel-dependent hydrogenase, large subunit (VIMSS)||21, 157|
|GSU0218||GSU0218||conserved hypothetical protein (VIMSS)||21, 266|
|GSU0265||GSU0265||membrane protein, putative (VIMSS)||21, 186|
|GSU0282||GSU0282||hypothetical protein (VIMSS)||36, 180|
|GSU0428||GSU0428||lipoprotein, putative (VIMSS)||21, 278|
|GSU0433||GSU0433||clpB protein, putative (NCBI)||21, 96|
|GSU0763||GSU0763||helicase, putative (NCBI)||130, 180|
|GSU0831||GSU0831||nitrogen regulatory protein P-II, putative (VIMSS)||27, 180|
|GSU0833||GSU0833||hypothetical protein (VIMSS)||180, 278|
|GSU0837||GSU0837||response regulator (VIMSS)||21, 155|
|GSU0848||GSU0848||ferredoxin family protein, putative (VIMSS)||21, 189|
|GSU0849||GSU0849||conserved hypothetical protein (VIMSS)||21, 157|
|GSU1015||GSU1015||hypothetical protein (VIMSS)||21, 189|
|GSU1049||GSU1049||conserved hypothetical protein (NCBI)||21, 272|
|GSU1050||GSU1050||sensory box histidine kinase (VIMSS)||21, 272|
|GSU1056||GSU1056||conserved hypothetical protein TIGR00149 (VIMSS)||21, 133|
|GSU1057||GSU1057||hypothetical protein (VIMSS)||21, 133|
|GSU1058||sucC||succinyl-CoA synthase, beta subunit (NCBI)||21, 133|
|GSU1214||GSU1214||tetracenomycin polyketide synthesis 8-o-methyltransferase, putative (NCBI)||148, 180|
|GSU1302||GSU1302||sensor histidine kinase/response regulator (VIMSS)||79, 180|
|GSU1415||GSU1415||response regulator (VIMSS)||21, 157|
|GSU1542||GSU1542||transcriptional regulator, Cro/CI family (VIMSS)||180, 235|
|GSU1581||GSU1581||polyA polymerase family protein (NCBI)||130, 180|
|GSU1685||GSU1685||HD domain protein (NCBI)||21, 38|
|GSU2349||GSU2349||hypothetical protein (VIMSS)||21, 45|
|GSU2374||GSU2374||hypothetical protein (VIMSS)||63, 180|
|GSU2512||GSU2512||hypothetical protein (VIMSS)||21, 180|
|GSU2532||GSU2532||conserved hypothetical protein (VIMSS)||180, 283|
|GSU2658||GSU2658||lipoprotein, putative (VIMSS)||180, 337|
|GSU2679||GSU2679||conserved hypothetical protein (VIMSS)||155, 180|
|GSU2774||GSU2774||hypothetical protein (VIMSS)||180, 232|
|GSU3119||GSU3119||sensor histidine kinase (VIMSS)||180, 278|
|GSU3180||GSU3180||conserved hypothetical protein (VIMSS)||1, 180|
|GSU3361||GSU3361||transglutaminase domain protein (NCBI)||180, 181|
|GSU3415||GSU3415||radical SAM domain protein/B12 binding domain protein (NCBI)||21, 157|
|GSU3417||GSU3417||dioxygenase, putative (VIMSS)||21, 59|
|GSU3418||GSU3418||sigma-54 dependent DNA-binding response regulator (VIMSS)||21, 274|
|GSU3426||GSU3426||hypothetical protein (VIMSS)||148, 180|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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Identity of gene members in a module may help to identify potential interactions between different functional modules. Therefore, neighbor genes that share the same module(s) with gene under consideration are shown here. For each memebr, gene name, description and modules that contain it are listed.
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