Organism : Geobacter sulfurreducens | Module List :
Regulation information for GSU2349(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for GSU2349
|Gene||Common Name||Description||Module membership|
|GSU0122||GSU0122||nickel-dependent hydrogenase, large subunit (VIMSS)||21, 157|
|GSU0184||b2690||HAD-superfamily hydrolase, subfamily IA, variant 1 (NCBI)||45, 234|
|GSU0218||GSU0218||conserved hypothetical protein (VIMSS)||21, 266|
|GSU0265||GSU0265||membrane protein, putative (VIMSS)||21, 186|
|GSU0279||GSU0279||cadherin domain/calx-beta domain protein (NCBI)||45, 253|
|GSU0366||GSU0366||transcriptional regulator, putative (VIMSS)||45, 280|
|GSU0428||GSU0428||lipoprotein, putative (VIMSS)||21, 278|
|GSU0433||GSU0433||clpB protein, putative (NCBI)||21, 96|
|GSU0596||GSU0596||response regulator (NCBI)||45, 86|
|GSU0597||GSU0597||hypothetical protein (VIMSS)||45, 59|
|GSU0683||GSU0683||methyl-accepting chemotaxis protein, putative (VIMSS)||45, 79|
|GSU0837||GSU0837||response regulator (VIMSS)||21, 155|
|GSU0848||GSU0848||ferredoxin family protein, putative (VIMSS)||21, 189|
|GSU0849||GSU0849||conserved hypothetical protein (VIMSS)||21, 157|
|GSU0891||GSU0891||subtilase domain protein (NCBI)||45, 218|
|GSU0917||GSU0917||conserved hypothetical protein (VIMSS)||45, 294|
|GSU1015||GSU1015||hypothetical protein (VIMSS)||21, 189|
|GSU1049||GSU1049||conserved hypothetical protein (NCBI)||21, 272|
|GSU1050||GSU1050||sensory box histidine kinase (VIMSS)||21, 272|
|GSU1056||GSU1056||conserved hypothetical protein TIGR00149 (VIMSS)||21, 133|
|GSU1057||GSU1057||hypothetical protein (VIMSS)||21, 133|
|GSU1058||sucC||succinyl-CoA synthase, beta subunit (NCBI)||21, 133|
|GSU1303||GSU1303||methyl-accepting chemotaxis protein (VIMSS)||45, 234|
|GSU1415||GSU1415||response regulator (VIMSS)||21, 157|
|GSU1532||nrd||conserved domain protein (NCBI)||45, 165|
|GSU1533||recC||exodeoxyribonuclease V, gamma subunit (NCBI)||45, 266|
|GSU1534||recB||exodeoxyribonuclease V, beta subunit (NCBI)||15, 45|
|GSU1617||lexA-2||LexA repressor (NCBI)||45, 216|
|GSU1685||GSU1685||HD domain protein (NCBI)||21, 38|
|GSU1711||GSU1711||integrative genetic element Gsu5, resolvase (VIMSS)||45, 104|
|GSU2349||GSU2349||hypothetical protein (VIMSS)||21, 45|
|GSU2512||GSU2512||hypothetical protein (VIMSS)||21, 180|
|GSU2530||GSU2530||GTPase YjeQ (NCBI)||45, 141|
|GSU2934||GSU2934||cytochrome c family protein (NCBI)||45, 266|
|GSU2935||GSU2935||cytochrome c family protein (NCBI)||45, 133|
|GSU2988||GSU2988||conserved hypothetical protein (VIMSS)||45, 193|
|GSU3032||GSU3032||hypothetical protein (VIMSS)||45, 234|
|GSU3415||GSU3415||radical SAM domain protein/B12 binding domain protein (NCBI)||21, 157|
|GSU3417||GSU3417||dioxygenase, putative (VIMSS)||21, 59|
|GSU3418||GSU3418||sigma-54 dependent DNA-binding response regulator (VIMSS)||21, 274|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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If the gene is a member of a module, regulators influencing that module are also considered to regulate the gene. Regulators table list total number of regulatory influences, regulators, modules and type of the influence.
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Identity of gene members in a module may help to identify potential interactions between different functional modules. Therefore, neighbor genes that share the same module(s) with gene under consideration are shown here. For each memebr, gene name, description and modules that contain it are listed.
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