Organism : Geobacter sulfurreducens | Module List :
Regulation information for GSU2374(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for GSU2374
|Gene||Common Name||Description||Module membership|
|GSU0105||GSU0105||cytochrome c family protein, putative (NCBI)||180, 181|
|GSU0282||GSU0282||hypothetical protein (VIMSS)||36, 180|
|GSU0462||GSU0462||peptidase, M48 family (NCBI)||51, 63|
|GSU0730||GSU0730||hypothetical protein (VIMSS)||63, 236|
|GSU0763||GSU0763||helicase, putative (NCBI)||130, 180|
|GSU0831||GSU0831||nitrogen regulatory protein P-II, putative (VIMSS)||27, 180|
|GSU0833||GSU0833||hypothetical protein (VIMSS)||180, 278|
|GSU0842||GSU0842||sensory box histidine kinase/response regulator (VIMSS)||63, 148|
|GSU0878||GSU0878||glycosyl transferase, group 2 family protein (NCBI)||63, 224|
|GSU1026||GSU1026||conserved hypothetical protein (VIMSS)||63, 160|
|GSU1027||GSU1027||glycosyl hydrolase, family 10 (VIMSS)||63, 203|
|GSU1028||GSU1028||peptidylarginine deiminase-related protein (NCBI)||63, 203|
|GSU1029||GSU1029||methyl-accepting chemotaxis protein (VIMSS)||63, 287|
|GSU1214||GSU1214||tetracenomycin polyketide synthesis 8-o-methyltransferase, putative (NCBI)||148, 180|
|GSU1285||GSU1285||sensory box sensor histidine kinase/response regulator (VIMSS)||63, 293|
|GSU1302||GSU1302||sensor histidine kinase/response regulator (VIMSS)||79, 180|
|GSU1542||GSU1542||transcriptional regulator, Cro/CI family (VIMSS)||180, 235|
|GSU1581||GSU1581||polyA polymerase family protein (NCBI)||130, 180|
|GSU1932||GSU1932||hypothetical protein (VIMSS)||63, 332|
|GSU2359||GSU2359||hypothetical protein (VIMSS)||63, 224|
|GSU2360||GSU2360||maltooligosyltrehalose synthase, putative (VIMSS)||63, 79|
|GSU2373||GSU2373||lipoprotein, putative (VIMSS)||63, 283|
|GSU2374||GSU2374||hypothetical protein (VIMSS)||63, 180|
|GSU2423||GSU2423||methyl-accepting chemotaxis protein, putative (VIMSS)||63, 206|
|GSU2512||GSU2512||hypothetical protein (VIMSS)||21, 180|
|GSU2532||GSU2532||conserved hypothetical protein (VIMSS)||180, 283|
|GSU2576||GSU2576||HD domain protein (NCBI)||63, 220|
|GSU2658||GSU2658||lipoprotein, putative (VIMSS)||180, 337|
|GSU2679||GSU2679||conserved hypothetical protein (VIMSS)||155, 180|
|GSU2774||GSU2774||hypothetical protein (VIMSS)||180, 232|
|GSU3119||GSU3119||sensor histidine kinase (VIMSS)||180, 278|
|GSU3180||GSU3180||conserved hypothetical protein (VIMSS)||1, 180|
|GSU3247||GSU3247||iron-sulfur cluster-binding protein (VIMSS)||63, 73|
|GSU3248||GSU3248||hypothetical protein (VIMSS)||63, 134|
|GSU3361||GSU3361||transglutaminase domain protein (NCBI)||180, 181|
|GSU3426||GSU3426||hypothetical protein (VIMSS)||148, 180|
|GSU3450||GSU3450||glutamate synthase-related protein (NCBI)||63, 288|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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Network inference algorithm uses de novo motif prediction for assigning genes to modules. If there are any motifs identified in the upstream region of a gene, the motif will be shown here. For each motif sequence logo, consensus and e-value will be shown.
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Identity of gene members in a module may help to identify potential interactions between different functional modules. Therefore, neighbor genes that share the same module(s) with gene under consideration are shown here. For each memebr, gene name, description and modules that contain it are listed.
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- 1. All genomic elements for the organism are represented as a circle and each element is separated by black tick marks. In this example chromosome and pDV represent main chromosome and plasmid for D. vulgaris Hildenborough, respectively.
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