Organism : Rhodobacter sphaeroides 2.4.1 | Module List :
Regulation information for RSP_0951(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for RSP_0951
|Gene||Common Name||Description||Module membership|
|RSP_0088||RSP_0088||ycfI, putative structural proteins (NCBI)||73, 168|
|RSP_0117||RSP_0117||Cytochrome c oxidase, subunit I (NCBI)||38, 238|
|RSP_0219||RSP_0219||hypothetical protein (NCBI)||168, 220|
|RSP_0328||nnrS||hypothetical protein (NCBI)||168, 249|
|RSP_0470||RSP_0470||hypothetical protein (NCBI)||168, 249|
|RSP_0511||RSP_0511||two component transcriptional regulator, LuxR family (NCBI)||168, 176|
|RSP_0524||RSP_0524||hypothetical protein (NCBI)||74, 168|
|RSP_0801||RSP_0801||deacetylase / probable acetylpolyamine aminohydrolase (NCBI)||168, 242|
|RSP_0864||RSP_0864||Puative heme-binding hypothetical protein (NCBI)||168, 238|
|RSP_0918||RSP_0918||hypothetical protein (NCBI)||150, 238|
|RSP_0947||RSP_0947||hypothetical protein (NCBI)||168, 213|
|RSP_0951||RSP_0951||hypothetical protein (NCBI)||168, 238|
|RSP_1210||RSP_1210||Response regulator receiver protein (NCBI)||73, 168|
|RSP_1300||RSP_1300||hypothetical protein (NCBI)||168, 303|
|RSP_1319||RSP_1319||possible invasion protein (NCBI)||73, 238|
|RSP_1640||RSP_1640||hypothetical protein (NCBI)||168, 233|
|RSP_1816||RSP_1816||Mg chelatase-related protein (NCBI)||238, 282|
|RSP_1822||RSP_1822||hypothetical protein (NCBI)||229, 238|
|RSP_1872||RSP_1872||Glycosyl transferase, family 2 (NCBI)||236, 238|
|RSP_1968||RSP_1968||Possible integrase/recombinase (NCBI)||236, 238|
|RSP_1992||RSP_1992||hypothetical protein (NCBI)||128, 238|
|RSP_2033||RSP_2033||hypothetical protein (NCBI)||19, 238|
|RSP_2059||RSP_2059||Potential phage tail tape measure protein (NCBI)||31, 238|
|RSP_2153||RSP_2153||hypothetical protein (NCBI)||238, 249|
|RSP_2186||RSP_2186||Transcriptional Regulator, MerR family (NCBI)||238, 307|
|RSP_2378||cypC||putative fatty acid beta hydroxylase (cytochrome P450) (NCBI)||236, 238|
|RSP_2413||lig2||putative ATP-dependent DNA Ligase (NCBI)||82, 238|
|RSP_2497||RSP_2497||ATPase (NCBI)||74, 238|
|RSP_2501||RSP_2501||hypothetical protein (NCBI)||238, 292|
|RSP_2632||argI||Arginase (NCBI)||95, 168|
|RSP_2769||RSP_2769||probable 5,10-methylenetetrahydrofolate reductase (NCBI)||238, 304|
|RSP_2770||RSP_2770||hypothetical protein (NCBI)||73, 238|
|RSP_2791||RSP_2791||hypothetical protein (NCBI)||168, 236|
|RSP_2930||RSP_2930||hypothetical protein (NCBI)||235, 238|
|RSP_2957||RSP_2957||hypothetical protein (NCBI)||168, 213|
|RSP_2988||RSP_2988||Pirin-related protein (NCBI)||155, 238|
|RSP_3026||RSP_3026||Transcriptional regulator, MocR family (NCBI)||83, 168|
|RSP_3037||RSP_3037||Putative short-chain dehydrogenase/reductase (NCBI)||57, 168|
|RSP_3043||RSP_3043||hypothetical protein (NCBI)||238, 249|
|RSP_3050||moaA||Molybdenum cofactor biosynthesis protein A (NCBI)||168, 308|
|RSP_3095||RSP_3095||sigma24 (NCBI)||168, 202|
|RSP_3096||RSP_3096||hypothetical protein (NCBI)||168, 304|
|RSP_3098||qoxB||QoxB, Quinol oxidase subunit II (NCBI)||168, 304|
|RSP_3137||RSP_3137||hypothetical protein (NCBI)||141, 168|
|RSP_3213||RSP_3213||hypothetical protein (NCBI)||168, 313|
|RSP_3257||RSP_3257||ABC peptide transporter, inner membrane subunit (NCBI)||168, 325|
|RSP_3322||acoR||acetoin transcriptional regulator, sigma54 specific, AcoR (NCBI)||238, 338|
|RSP_3343||RSP_3343||putative glycosyl transferase (NCBI)||14, 168|
|RSP_3427||RSP_3427||hypothetical protein (NCBI)||137, 238|
|RSP_3433||RSP_3433||transcriptionalregulator, CopG family (NCBI)||1, 238|
|RSP_3444||RSP_3444||Putative Xaa-Pro aminopeptidase (NCBI)||61, 168|
|RSP_3446||RSP_3446||Putative amino acid hydrolase (NCBI)||61, 168|
|RSP_3447||RSP_3447||Putative dehydrogenase (NCBI)||61, 168|
|RSP_3497||RSP_3497||Caspase-1, p20 (NCBI)||103, 168|
|RSP_3566||RSP_3566||dimethylglycine dehydrogenase (NCBI)||27, 168|
|RSP_3608||RSP_3608||hypothetical protein (NCBI)||147, 238|
|RSP_3613||RSP_3613||Glycosyltransferase (NCBI)||238, 292|
|RSP_3614||RSP_3614||hypothetical protein (NCBI)||150, 238|
|RSP_3657||RSP_3657||putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase (NCBI)||196, 238|
|RSP_3793||RSP_3793||hypothetical protein (NCBI)||73, 168|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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CircVisOur circular module explorer is adapted from visquick originally developed by Dick Kreisberg of Ilya Shmulevich lab at ISB for The Cancer Genome Atlas. We use simplified version of visquick to display distribution of module members and their interactions across the genome. This view provides summary of regulation information for a gene. The main components are;
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