Organism : Rhodobacter sphaeroides 2.4.1 | Module List :
Regulation information for RSP_2791(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for RSP_2791
|Gene||Common Name||Description||Module membership|
|RSP_0088||RSP_0088||ycfI, putative structural proteins (NCBI)||73, 168|
|RSP_0219||RSP_0219||hypothetical protein (NCBI)||168, 220|
|RSP_0328||nnrS||hypothetical protein (NCBI)||168, 249|
|RSP_0413||RSP_0413||two component diguanylate cyclase (NCBI)||137, 236|
|RSP_0462||RSP_0462||hypothetical protein (NCBI)||111, 236|
|RSP_0470||RSP_0470||hypothetical protein (NCBI)||168, 249|
|RSP_0511||RSP_0511||two component transcriptional regulator, LuxR family (NCBI)||168, 176|
|RSP_0524||RSP_0524||hypothetical protein (NCBI)||74, 168|
|RSP_0801||RSP_0801||deacetylase / probable acetylpolyamine aminohydrolase (NCBI)||168, 242|
|RSP_0864||RSP_0864||Puative heme-binding hypothetical protein (NCBI)||168, 238|
|RSP_0947||RSP_0947||hypothetical protein (NCBI)||168, 213|
|RSP_0951||RSP_0951||hypothetical protein (NCBI)||168, 238|
|RSP_1010||RSP_1010||possible esterase/lipase/thioesterase (NCBI)||196, 236|
|RSP_1014||RSP_1014||sigma24 (NCBI)||54, 236|
|RSP_1114||RSP_1114||Hemolysin-type calcium-binding toxin (NCBI)||28, 236|
|RSP_1210||RSP_1210||Response regulator receiver protein (NCBI)||73, 168|
|RSP_1300||RSP_1300||hypothetical protein (NCBI)||168, 303|
|RSP_1428||RSP_1428||Possible Pre (Mob) type recombination enzyme (NCBI)||73, 236|
|RSP_1638||RSP_1638||hypothetical protein (NCBI)||233, 236|
|RSP_1640||RSP_1640||hypothetical protein (NCBI)||168, 233|
|RSP_1643||RSP_1643||hypothetical protein (NCBI)||236, 300|
|RSP_1662||RSP_1662||Integrase/recombinase (NCBI)||236, 380|
|RSP_1872||RSP_1872||Glycosyl transferase, family 2 (NCBI)||236, 238|
|RSP_1955||RSP_1955||hypothetical protein (NCBI)||124, 236|
|RSP_1968||RSP_1968||Possible integrase/recombinase (NCBI)||236, 238|
|RSP_2378||cypC||putative fatty acid beta hydroxylase (cytochrome P450) (NCBI)||236, 238|
|RSP_2468||RSP_2468||putative portal protein (NCBI)||193, 236|
|RSP_2469||RSP_2469||hypothetical protein (NCBI)||193, 236|
|RSP_2470||RSP_2470||putative prohead protease (NCBI)||193, 236|
|RSP_2589||RSP_2589||hypothetical protein (NCBI)||236, 338|
|RSP_2632||argI||Arginase (NCBI)||95, 168|
|RSP_2757||RSP_2757||hypothetical protein (NCBI)||236, 246|
|RSP_2789||RSP_2789||hypothetical protein (NCBI)||236, 282|
|RSP_2791||RSP_2791||hypothetical protein (NCBI)||168, 236|
|RSP_2957||RSP_2957||hypothetical protein (NCBI)||168, 213|
|RSP_3026||RSP_3026||Transcriptional regulator, MocR family (NCBI)||83, 168|
|RSP_3037||RSP_3037||Putative short-chain dehydrogenase/reductase (NCBI)||57, 168|
|RSP_3050||moaA||Molybdenum cofactor biosynthesis protein A (NCBI)||168, 308|
|RSP_3095||RSP_3095||sigma24 (NCBI)||168, 202|
|RSP_3096||RSP_3096||hypothetical protein (NCBI)||168, 304|
|RSP_3098||qoxB||QoxB, Quinol oxidase subunit II (NCBI)||168, 304|
|RSP_3100||RSP_3100||hypothetical protein (NCBI)||137, 236|
|RSP_3137||RSP_3137||hypothetical protein (NCBI)||141, 168|
|RSP_3206||RSP_3206||Putative xanthine dehydrogenase (NCBI)||74, 236|
|RSP_3213||RSP_3213||hypothetical protein (NCBI)||168, 313|
|RSP_3257||RSP_3257||ABC peptide transporter, inner membrane subunit (NCBI)||168, 325|
|RSP_3258||RSP_3258||ABC peptide transporter, inner membrane subunit (NCBI)||236, 282|
|RSP_3259||RSP_3259||Transcription antitermination protein (NCBI)||77, 236|
|RSP_3338||RSP_3338||ABC spermidine/putrescine transporter, ATPase subunit (NCBI)||236, 251|
|RSP_3343||RSP_3343||putative glycosyl transferase (NCBI)||14, 168|
|RSP_3380||RSP_3380||hypothetical protein (NCBI)||77, 236|
|RSP_3444||RSP_3444||Putative Xaa-Pro aminopeptidase (NCBI)||61, 168|
|RSP_3446||RSP_3446||Putative amino acid hydrolase (NCBI)||61, 168|
|RSP_3447||RSP_3447||Putative dehydrogenase (NCBI)||61, 168|
|RSP_3497||RSP_3497||Caspase-1, p20 (NCBI)||103, 168|
|RSP_3566||RSP_3566||dimethylglycine dehydrogenase (NCBI)||27, 168|
|RSP_3786||RSP_3786||hypothetical protein (NCBI)||141, 236|
|RSP_3787||RSP_3787||hypothetical protein (NCBI)||236, 285|
|RSP_3793||RSP_3793||hypothetical protein (NCBI)||73, 168|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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