Organism : Rhodobacter sphaeroides 2.4.1 | Module List :
Regulation information for RSP_1318(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for RSP_1318
|Gene||Common Name||Description||Module membership|
|RSP_0157||RSP_0157||Beta-mannanase (NCBI)||147, 290|
|RSP_0158||RSP_0158||cellulose synthase-like protein (NCBI)||147, 290|
|RSP_0159||galE-2||UDP-glucose 4-epimerase (NCBI)||147, 290|
|RSP_0160||RSP_0160||NAD-dependent epimerase/dehydratase family protein (NCBI)||147, 290|
|RSP_0213||RSP_0213||Phage terminase-like protein large subunit (NCBI)||193, 325|
|RSP_0214||RSP_0214||possible uncharacterized phage protein (NCBI)||323, 325|
|RSP_0300||RSP_0300||ABC branched chain amino acid transporter, inner membrane subunit (NCBI)||103, 147|
|RSP_0613||RSP_0613||hypothetical protein (NCBI)||214, 325|
|RSP_0614||RSP_0614||hypothetical protein (NCBI)||249, 325|
|RSP_0617||RSP_0617||hypothetical protein (NCBI)||103, 325|
|RSP_0960||RSP_0960||alcohol dehydrogenase (NCBI)||239, 325|
|RSP_1084||RSP_1084||putative glycosyl transferase, group 1 family protein (NCBI)||325, 379|
|RSP_1142||RSP_1142||hypothetical membrane protein (NCBI)||44, 325|
|RSP_1309||fliP||Type III secretion system inner membrane P protein (NCBI)||147, 290|
|RSP_1310||RSP_1310||hypothetical protein (NCBI)||147, 290|
|RSP_1311||fliH||putative flagellar biosynthesis/type III secretory pathway protein (NCBI)||147, 290|
|RSP_1312||fliF||flagellar MS-ring protein (RefSeq)||147, 290|
|RSP_1313||RSP_1313||possible flagellar synthesis protein (NCBI)||147, 290|
|RSP_1314||RSP_1314||hypothetical protein (NCBI)||147, 290|
|RSP_1315||RSP_1315||hypothetical protein (NCBI)||147, 290|
|RSP_1316||motA||Flagellar motor protein MotA (NCBI)||147, 290|
|RSP_1318||RSP_1318||hypothetical protein (NCBI)||147, 325|
|RSP_1444||RSP_1444||ABC sugar transporter, inner membrane subunit (NCBI)||155, 325|
|RSP_1656||RSP_1656||hypothetical protein (NCBI)||325, 342|
|RSP_1658||RSP_1658||hypothetical protein (NCBI)||325, 342|
|RSP_1659||RSP_1659||hypothetical protein (NCBI)||325, 342|
|RSP_1820||RSP_1820||hypothetical protein (NCBI)||40, 325|
|RSP_1932||RSP_1932||hypothetical protein (NCBI)||220, 325|
|RSP_1953||RSP_1953||Transcriptional regulator, CRP/FNR family (NCBI)||155, 325|
|RSP_1964||RSP_1964||hypothetical protein (NCBI)||94, 147|
|RSP_2037||RSP_2037||hypothetical protein (NCBI)||138, 147|
|RSP_2105||RSP_2105||hypothetical protein (NCBI)||103, 325|
|RSP_2217||RSP_2217||hypothetical protein (NCBI)||302, 325|
|RSP_2244||RSP_2244||hypothetical protein (NCBI)||140, 325|
|RSP_2280||RSP_2280||PAS sensor hybrid histidine kinase (NCBI)||94, 325|
|RSP_2363||RSP_2363||Short-chain dehydrogenase/reductase (NCBI)||255, 325|
|RSP_2371||RSP_2371||3-oxoacyl-(acyl-carrier protein) reductase / Short-chain dehydrogenase/reductase SDR (NCBI)||135, 325|
|RSP_2703||RSP_2703||ABC dipeptide transporter, periplasmic binding protein (NCBI)||36, 325|
|RSP_2720||RSP_2720||Putative LysE/RhtB family amino acid efflux pump (NCBI)||38, 325|
|RSP_3000||RSP_3000||hypothetical protein (NCBI)||14, 325|
|RSP_3051||RSP_3051||Putative phosphatase (NCBI)||313, 325|
|RSP_3252||RSP_3252||ABC peptide transporter, fused ATPase domains (NCBI)||14, 325|
|RSP_3257||RSP_3257||ABC peptide transporter, inner membrane subunit (NCBI)||168, 325|
|RSP_3260||amiC||Putative negative amidase regulator, AmiC (NCBI)||285, 325|
|RSP_3466||RSP_3466||hypothetical protein (NCBI)||147, 176|
|RSP_3467||RSP_3467||hypothetical protein (NCBI)||147, 176|
|RSP_3468||RSP_3468||hypothetical protein (NCBI)||147, 176|
|RSP_3469||RSP_3469||hypothetical protein (NCBI)||147, 176|
|RSP_3470||RSP_3470||hypothetical protein (NCBI)||147, 176|
|RSP_3471||RSP_3471||hypothetical protein (NCBI)||147, 292|
|RSP_3545||RSP_3545||hypothetical protein (NCBI)||325, 342|
|RSP_3575||gvpK||putative gas vesicle synthesis protein (NCBI)||153, 325|
|RSP_3608||RSP_3608||hypothetical protein (NCBI)||147, 238|
|RSP_3616||RSP_3616||transcriptional regulator, Crp-Fnr family (NCBI)||140, 147|
|RSP_3780||RSP_3780||hypothetical protein (NCBI)||147, 292|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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If the gene is a member of a module, regulators influencing that module are also considered to regulate the gene. Regulators table list total number of regulatory influences, regulators, modules and type of the influence.
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Identity of gene members in a module may help to identify potential interactions between different functional modules. Therefore, neighbor genes that share the same module(s) with gene under consideration are shown here. For each memebr, gene name, description and modules that contain it are listed.
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