Organism : Rhodobacter sphaeroides 2.4.1 | Module List :
Regulation information for RSP_1964(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for RSP_1964
|Gene||Common Name||Description||Module membership|
|RSP_0115||RSP_0115||Class I triheme cytochrome c (NCBI)||94, 313|
|RSP_0157||RSP_0157||Beta-mannanase (NCBI)||147, 290|
|RSP_0158||RSP_0158||cellulose synthase-like protein (NCBI)||147, 290|
|RSP_0159||galE-2||UDP-glucose 4-epimerase (NCBI)||147, 290|
|RSP_0160||RSP_0160||NAD-dependent epimerase/dehydratase family protein (NCBI)||147, 290|
|RSP_0300||RSP_0300||ABC branched chain amino acid transporter, inner membrane subunit (NCBI)||103, 147|
|RSP_0512||RSP_0512||multisensor hybrid histidine kinase (NCBI)||94, 304|
|RSP_0566||RSP_0566||possible transporter, DMT superfamily (NCBI)||94, 357|
|RSP_1143||RSP_1143||4Fe-4S ferredoxin, iron-sulfur cluster binding protein (NCBI)||94, 326|
|RSP_1309||fliP||Type III secretion system inner membrane P protein (NCBI)||147, 290|
|RSP_1310||RSP_1310||hypothetical protein (NCBI)||147, 290|
|RSP_1311||fliH||putative flagellar biosynthesis/type III secretory pathway protein (NCBI)||147, 290|
|RSP_1312||fliF||flagellar MS-ring protein (RefSeq)||147, 290|
|RSP_1313||RSP_1313||possible flagellar synthesis protein (NCBI)||147, 290|
|RSP_1314||RSP_1314||hypothetical protein (NCBI)||147, 290|
|RSP_1315||RSP_1315||hypothetical protein (NCBI)||147, 290|
|RSP_1316||motA||Flagellar motor protein MotA (NCBI)||147, 290|
|RSP_1318||RSP_1318||hypothetical protein (NCBI)||147, 325|
|RSP_1414||RSP_1414||hypothetical protein (NCBI)||54, 94|
|RSP_1432||RSP_1432||hypothetical protein (NCBI)||94, 157|
|RSP_1631||RSP_1631||hypothetical protein (NCBI)||94, 347|
|RSP_1632||RSP_1632||hypothetical protein (NCBI)||94, 347|
|RSP_1633||RSP_1633||hypothetical protein (NCBI)||94, 347|
|RSP_1919||RSP_1919||hypothetical protein (NCBI)||94, 106|
|RSP_1964||RSP_1964||hypothetical protein (NCBI)||94, 147|
|RSP_2037||RSP_2037||hypothetical protein (NCBI)||138, 147|
|RSP_2054||RSP_2054||hypothetical protein (NCBI)||31, 94|
|RSP_2057||RSP_2057||hypothetical protein (NCBI)||94, 347|
|RSP_2280||RSP_2280||PAS sensor hybrid histidine kinase (NCBI)||94, 325|
|RSP_2281||RSP_2281||two-component trancriptional regulator, winged helix family (NCBI)||94, 265|
|RSP_3466||RSP_3466||hypothetical protein (NCBI)||147, 176|
|RSP_3467||RSP_3467||hypothetical protein (NCBI)||147, 176|
|RSP_3468||RSP_3468||hypothetical protein (NCBI)||147, 176|
|RSP_3469||RSP_3469||hypothetical protein (NCBI)||147, 176|
|RSP_3470||RSP_3470||hypothetical protein (NCBI)||147, 176|
|RSP_3471||RSP_3471||hypothetical protein (NCBI)||147, 292|
|RSP_3608||RSP_3608||hypothetical protein (NCBI)||147, 238|
|RSP_3616||RSP_3616||transcriptional regulator, Crp-Fnr family (NCBI)||140, 147|
|RSP_3632||RSP_3632||hypothetical protein (NCBI)||31, 94|
|RSP_3692||RSP_3692||Carbohydrate kinase, PfkB/Ribokinase (NCBI)||94, 189|
|RSP_3693||RSP_3693||BtpA protein (NCBI)||94, 233|
|RSP_3694||RSP_3694||Putative transcription activator (NCBI)||94, 233|
|RSP_3765||RSP_3765||hypothetical protein (NCBI)||94, 347|
|RSP_3766||RSP_3766||hypothetical protein (NCBI)||94, 347|
|RSP_3779||RSP_3779||hypothetical protein (NCBI)||94, 146|
|RSP_3780||RSP_3780||hypothetical protein (NCBI)||147, 292|
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If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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