Organism : Rhodobacter sphaeroides 2.4.1 | Module List :
Regulation information for RSP_3469(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for RSP_3469
|Gene||Common Name||Description||Module membership|
|RSP_0113||RSP_0113||Phospholipase D/Transphosphatidylase (NCBI)||176, 362|
|RSP_0114||RSP_0114||hypothetical protein (NCBI)||176, 294|
|RSP_0157||RSP_0157||Beta-mannanase (NCBI)||147, 290|
|RSP_0158||RSP_0158||cellulose synthase-like protein (NCBI)||147, 290|
|RSP_0159||galE-2||UDP-glucose 4-epimerase (NCBI)||147, 290|
|RSP_0160||RSP_0160||NAD-dependent epimerase/dehydratase family protein (NCBI)||147, 290|
|RSP_0300||RSP_0300||ABC branched chain amino acid transporter, inner membrane subunit (NCBI)||103, 147|
|RSP_0429||RSP_0429||Probable ABC drug/toxin efflux transporter; fused ATPase and inner membrane subunits (NCBI)||176, 329|
|RSP_0511||RSP_0511||two component transcriptional regulator, LuxR family (NCBI)||168, 176|
|RSP_0765||RSP_0765||SAM-dependent methyltransferase (NCBI)||10, 176|
|RSP_0941||RSP_0941||ABC transporter, ATPase subunit (NCBI)||92, 176|
|RSP_0942||RSP_0942||ABC transporter, inner membrane subunit (NCBI)||92, 176|
|RSP_1309||fliP||Type III secretion system inner membrane P protein (NCBI)||147, 290|
|RSP_1310||RSP_1310||hypothetical protein (NCBI)||147, 290|
|RSP_1311||fliH||putative flagellar biosynthesis/type III secretory pathway protein (NCBI)||147, 290|
|RSP_1312||fliF||flagellar MS-ring protein (RefSeq)||147, 290|
|RSP_1313||RSP_1313||possible flagellar synthesis protein (NCBI)||147, 290|
|RSP_1314||RSP_1314||hypothetical protein (NCBI)||147, 290|
|RSP_1315||RSP_1315||hypothetical protein (NCBI)||147, 290|
|RSP_1316||motA||Flagellar motor protein MotA (NCBI)||147, 290|
|RSP_1318||RSP_1318||hypothetical protein (NCBI)||147, 325|
|RSP_1524||RSP_1524||Nucleotidyltransferase family protein (NCBI)||110, 176|
|RSP_1566||RSP_1566||hypothetical protein (NCBI)||176, 381|
|RSP_1600||RSP_1600||possible transporter, DME family, DMT superfamily (NCBI)||176, 350|
|RSP_1922||RSP_1922||Transcriptional regulator, GntR family, with aminotransferase domain (NCBI)||1, 176|
|RSP_1964||RSP_1964||hypothetical protein (NCBI)||94, 147|
|RSP_2003||yibQ||YibQ protein (NCBI)||176, 285|
|RSP_2026||RSP_2026||transcriptional regulator, AraC family (NCBI)||103, 176|
|RSP_2037||RSP_2037||hypothetical protein (NCBI)||138, 147|
|RSP_2160||gno||Short-chain dehydrogenase/reductase (NCBI)||20, 176|
|RSP_3052||RSP_3052||transcriptional regulator, LysR family (NCBI)||97, 176|
|RSP_3053||RSP_3053||Possible dioxygenase/glyoxalase family protein (NCBI)||97, 176|
|RSP_3055||RSP_3055||transcriptional regulator, MarR family (NCBI)||176, 242|
|RSP_3085||RSP_3085||Conserved hypothetical membrane protein (NCBI)||157, 176|
|RSP_3086||RSP_3086||periplasmic sensor signal transduction histidine kinase (NCBI)||83, 176|
|RSP_3087||dgkA||diacylglycerol kinase (NCBI)||97, 176|
|RSP_3088||RSP_3088||two component transcriptional regulator, winged helix family (NCBI)||176, 213|
|RSP_3157||RSP_3157||ABC transporter, inner membrane subunit (NCBI)||19, 176|
|RSP_3202||RSP_3202||transcriptional regulator, AraC family (NCBI)||82, 176|
|RSP_3215||RSP_3215||hypothetical protein (NCBI)||176, 358|
|RSP_3245||RSP_3245||Possible transporter, Major facilitator superfamily (MFS) (NCBI)||176, 380|
|RSP_3284||iolD||Acetolactate synthase (NCBI)||176, 246|
|RSP_3377||RSP_3377||Glutathione S-transferase family protein (NCBI)||176, 216|
|RSP_3466||RSP_3466||hypothetical protein (NCBI)||147, 176|
|RSP_3467||RSP_3467||hypothetical protein (NCBI)||147, 176|
|RSP_3468||RSP_3468||hypothetical protein (NCBI)||147, 176|
|RSP_3469||RSP_3469||hypothetical protein (NCBI)||147, 176|
|RSP_3470||RSP_3470||hypothetical protein (NCBI)||147, 176|
|RSP_3471||RSP_3471||hypothetical protein (NCBI)||147, 292|
|RSP_3608||RSP_3608||hypothetical protein (NCBI)||147, 238|
|RSP_3616||RSP_3616||transcriptional regulator, Crp-Fnr family (NCBI)||140, 147|
|RSP_3629||RSP_3629||hypothetical protein (NCBI)||176, 302|
|RSP_3780||RSP_3780||hypothetical protein (NCBI)||147, 292|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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