Organism : Rhodobacter sphaeroides 2.4.1 | Module List :
conservd hypothetical protein (NCBI)
Functional Annotations (1)
|Uncharacterized protein conserved in bacteria||cog/ cog|
Regulation information for RSP_2007(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Functional Enrichment for RSP_2007
|Uncharacterized protein conserved in bacteria||cog/ cog|
Module neighborhood information for RSP_2007
|Gene||Common Name||Description||Module membership|
|RSP_0091||smoE||ABC sorbitol/mannitol transporter, periplasmic binding protein (NCBI)||56, 64|
|RSP_0092||smoF||ABC sorbitol/mannitol transporter, inner membrane subunit (NCBI)||56, 64|
|RSP_0093||smoG||ABC sorbitol/mannitol transporter, inner membrane subunit (NCBI)||56, 64|
|RSP_0094||smoK||ABC sorbitol/mannitol transporter, ATPase subunit (NCBI)||56, 64|
|RSP_0095||smoS||Sorbitol dehydrogenase (NCBI)||56, 64|
|RSP_0096||mtlK||Mannitol dehydrogenase (NCBI)||56, 64|
|RSP_0458||RSP_0458||hypothetical protein (NCBI)||35, 64|
|RSP_0549||RSP_0549||hypothetical protein (NCBI)||71, 171|
|RSP_0769||RSP_0769||Glutathione S-transferase (NCBI)||23, 71|
|RSP_0823||SHMT||serine hydroxymethyltransferase protein (NCBI)||71, 85|
|RSP_0885||SseA||Thiosulfate sulfurtransferase, Rhodanese-like (NCBI)||71, 171|
|RSP_0924||cinA||Predicted nucleotide-utilizing enzyme/competence-damage associated protein (NCBI)||71, 286|
|RSP_1008||RSP_1008||4-hydroxybenzoate octaprenyltransferase (NCBI)||71, 164|
|RSP_1009||RSP_1009||possible outer membrane protein, OmpA family (NCBI)||71, 164|
|RSP_1033||RSP_1033||OmpA family protein (NCBI)||16, 71|
|RSP_1138||RSP_1138||two component transcriptional regulator, winged helix family (NCBI)||64, 250|
|RSP_1139||RSP_1139||transcriptional regulator, MarR family (NCBI)||64, 250|
|RSP_1140||ilvE||Branched chain acid aminotransferase (NCBI)||64, 112|
|RSP_1460||RSP_1460||hypothetical protein (NCBI)||71, 93|
|RSP_1489||RSP_1489||Protein containing thioredoxin domain (NCBI)||30, 71|
|RSP_1679||RSP_1679||acyl-CoA dehydrogenase (NCBI)||64, 140|
|RSP_1760||RSP_1760||hypothetical protein (NCBI)||71, 377|
|RSP_1808||trpS||tryptophanyl-tRNA synthetase (NCBI)||71, 360|
|RSP_1843||ftsY||Signal recognition particle-docking protein FtsY (NCBI)||71, 309|
|RSP_1851||metZ||O-succinylhomoserine sulfhydrylase (NCBI)||71, 360|
|RSP_1880||RSP_1880||hypothetical protein (NCBI)||64, 185|
|RSP_2007||RSP_2007||conservd hypothetical protein (NCBI)||64, 71|
|RSP_2147||cysK||O-acetylserine (Thiol)-lyase, cysteine synthase (NCBI)||71, 184|
|RSP_2193||gcvT||predicted aminomethyltransferase, tetrahydrofolate dependent (NCBI)||71, 309|
|RSP_2261||ydjI||Antifreeze protein, type I (NCBI)||64, 200|
|RSP_2336||RSP_2336||hypothetical protein (NCBI)||71, 181|
|RSP_2387||RSP_2387||hypothetical protein (NCBI)||71, 286|
|RSP_2408||RSP_2408||hypothetical protein (NCBI)||71, 322|
|RSP_2453||RSP_2453||putative oxidoreductase (NAD/NADP dependent) (NCBI)||71, 166|
|RSP_2481||cysE||serine acetyltransferase (NCBI)||46, 64|
|RSP_2590||RSP_2590||hypothetical protein (NCBI)||64, 338|
|RSP_2763||RSP_2763||hypothetical protein (NCBI)||48, 64|
|RSP_2768||RSP_2768||5-methyltetrahydrofolate S-homocysteine methyltransferase (NCBI)||27, 71|
|RSP_2801||tetR||transcriptional regulator, TetR family, (NCBI)||3, 64|
|RSP_2802||RSP_2802||multidrug/cation efflux pump, membrane fusion protein subunit (NCBI)||3, 64|
|RSP_2803||RSP_2803||multidrug/cation efflux pump, RND superfamily (NCBI)||3, 64|
|RSP_2856||RSP_2856||putative oligopeptide ABC transporter, periplasmic-binding protein (NCBI)||64, 277|
|RSP_2876||RSP_2876||putative carbon monoxide dehydrogenase medium chain (NCBI)||64, 338|
|RSP_2877||coxL||Putative carbon monoxide dehydrogenase large chain (NCBI)||64, 338|
|RSP_2878||coxS||Putative carbon-monoxide dehydrogenase small chain (NCBI)||64, 338|
|RSP_2879||RSP_2879||hypothetical protein (NCBI)||64, 338|
|RSP_2948||RSP_2948||Putative Pyruvate ferredoxin/flavodoxin oxidoreductase (NCBI)||64, 223|
|RSP_2975||RSP_2975||hypothetical protein (NCBI)||71, 309|
|RSP_2982||gcpE||Probable 4-hydroxy-3-methylbut-2-en-1-yl diphosphate (NCBI)||64, 185|
|RSP_2985||RSP_2985||hypothetical protein (NCBI)||71, 181|
|RSP_2986||RSP_2986||ArgE/DapE/Acy1 family protein (NCBI)||52, 71|
|RSP_2987||RSP_2987||probable acetyltransferase (NCBI)||71, 181|
|RSP_3562||sqr||sulfide-quinone reductase (NCBI)||64, 237|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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Identity of gene members in a module may help to identify potential interactions between different functional modules. Therefore, neighbor genes that share the same module(s) with gene under consideration are shown here. For each memebr, gene name, description and modules that contain it are listed.
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CircVisOur circular module explorer is adapted from visquick originally developed by Dick Kreisberg of Ilya Shmulevich lab at ISB for The Cancer Genome Atlas. We use simplified version of visquick to display distribution of module members and their interactions across the genome. This view provides summary of regulation information for a gene. The main components are;
- 1. All genomic elements for the organism are represented as a circle and each element is separated by black tick marks. In this example chromosome and pDV represent main chromosome and plasmid for D. vulgaris Hildenborough, respectively.
- 2. Source gene
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