Organism : Rhodobacter sphaeroides 2.4.1 | Module List :
Regulation information for RSP_3785(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for RSP_3785
|Gene||Common Name||Description||Module membership|
|RSP_0010||RSP_0010||homoserine O-succinyltransferase (NCBI)||91, 133|
|RSP_0011||RSP_0011||Predicted hydrolases or acyltransferases (alpha/beta hydrolase) (NCBI)||91, 366|
|RSP_0013||RSP_0013||hypothetical protein (NCBI)||68, 91|
|RSP_0014||RSP_0014||transcriptional regulator, TetR family (NCBI)||91, 215|
|RSP_0774||RSP_0774||RNA binding protein (NCBI)||91, 184|
|RSP_1018||RSP_1018||Glycolate oxidase iron-sulfur subunit (NCBI)||91, 148|
|RSP_1019||RSP_1019||putative glycolate oxidase subunit protein (NCBI)||91, 148|
|RSP_1034||pdhR||Pyruvate dehydrogenase complex repressor (NCBI)||91, 148|
|RSP_1130||RSP_1130||hypothetical membrane protein (NCBI)||54, 91|
|RSP_1172||dnaJ||Chaperone, DnaJ (NCBI)||91, 297|
|RSP_1262||RSP_1262||response regulator receiver protein (NCBI)||105, 125|
|RSP_1292||RSP_1292||putative Aldehyde dehydrogenase (NCBI)||91, 107|
|RSP_1450||RSP_1450||Inositol monophosphatase family protein (NCBI)||105, 292|
|RSP_1451||RSP_1451||ABC peptide/nickel/opine transporter, periplasmic substrate-binding protein (NCBI)||17, 105|
|RSP_1453||RSP_1453||ABC peptide/nickel/opine transporter, inner membrane subunit (NCBI)||17, 105|
|RSP_1454||RSP_1454||ABC peptide/nickel/opine transporter, fused ATPase subunits (NCBI)||17, 105|
|RSP_1455||RSP_1455||putative N-carbamoyl-beta-alanine amidohydrolase (NCBI)||17, 105|
|RSP_1456||RSP_1456||hypothetical protein (NCBI)||31, 105|
|RSP_1457||RSP_1457||putative choline kinase (NCBI)||17, 105|
|RSP_1487||RSP_1487||hypothetical protein (NCBI)||91, 289|
|RSP_1488||RSP_1488||Possible glyoxalase (NCBI)||91, 289|
|RSP_1516||RSP_1516||putative S-adenosyl L-homocystein hydrolase (NCBI)||91, 197|
|RSP_1876||RSP_1876||hypothetical protein (NCBI)||105, 353|
|RSP_1895||RSP_1895||Small-conductance mechanosensitive ion channel (NCBI)||91, 231|
|RSP_1899||RSP_1899||Predicted ATPase (NCBI)||91, 220|
|RSP_1900||RSP_1900||hypothetical protein (NCBI)||91, 233|
|RSP_1901||RSP_1901||Hypothetical protein with TPR repeat (NCBI)||91, 245|
|RSP_2032||RSP_2032||putative hypothetical Gifsy-1 prophage protein (NCBI)||62, 105|
|RSP_2036||RSP_2036||putative ECF/RNA polymerase sigma factor protein (NCBI)||11, 105|
|RSP_2157||RSP_2157||ABC transporter, inner membrane subunit (NCBI)||105, 114|
|RSP_2263||RSP_2263||hypothetical protein (NCBI)||91, 125|
|RSP_2315||RSP_2315||hypothetical protein (NCBI)||105, 292|
|RSP_2456||radA||DNA Repair Protein (NCBI)||39, 91|
|RSP_2605||RSP_2605||hypothetical protein (NCBI)||91, 197|
|RSP_2606||RSP_2606||ArsR family Arsenical Resistance Operon Repressor (NCBI)||91, 197|
|RSP_2607||RSP_2607||nitrilotriacetate monooxygenase component B (NCBI)||91, 197|
|RSP_2608||corA||magnesium/cobalt transport protein, MIT family (NCBI)||91, 197|
|RSP_2750||RSP_2750||hypothetical protein (NCBI)||77, 105|
|RSP_2751||RSP_2751||hypothetical protein (NCBI)||105, 229|
|RSP_2753||RSP_2753||hypothetical protein (NCBI)||77, 105|
|RSP_2754||RSP_2754||hypothetical protein (NCBI)||105, 116|
|RSP_2810||RSP_2810||ABC transporter, ATPase subunit (NCBI)||91, 294|
|RSP_3057||RSP_3057||ABC proline/glycine betaine transporter, ATPase subunit (NCBI)||105, 342|
|RSP_3058||RSP_3058||ABC proline/glycine betaine transporter, inner membrane subunit (NCBI)||105, 342|
|RSP_3059||RSP_3059||ABC proline/glycine betaine transporter, periplasmic substrate-binding protein (NCBI)||105, 342|
|RSP_3106||RSP_3106||Cation efflux transporter, CDF family (NCBI)||105, 288|
|RSP_3107||RSP_3107||hypothetical protein (NCBI)||91, 350|
|RSP_3151||RSP_3151||ABC nitrate/sulfonate/bicarbonate transporter family, periplasmic substrate-binding protein (NCBI)||105, 110|
|RSP_3152||RSP_3152||ABC nitrate/sulfonate/bicarbonate transporter family, periplasmic substrate-binding protein (NCBI)||88, 105|
|RSP_3154||RSP_3154||ABC nitrate/sulfonate/bicarbonate transporter family, ATPase subunit (NCBI)||105, 251|
|RSP_3384||RSP_3384||mandelate racemase/muconate lactonizing enzyme family protein (NCBI)||91, 346|
|RSP_3421||RSP_3421||hypothetical protein (NCBI)||77, 105|
|RSP_3435||RSP_3435||possible DNA-binding protein (NCBI)||91, 316|
|RSP_3456||RSP_3456||Putative dihydrodipicolinate synthase (NCBI)||61, 91|
|RSP_3574||hutH||putative histidine ammonia-lyase (NCBI)||44, 105|
|RSP_3655||RSP_3655||Dihydrodipicolinate synthase/N-acetylneuraminate lyase (NCBI)||105, 157|
|RSP_3656||RSP_3656||NAD-dependent aldehyde dehydrogenases (NCBI)||31, 105|
|RSP_3658||hpcH||putative 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (NCBI)||105, 316|
|RSP_3670||RSP_3670||putative oxidoreductase myo-inositol 2-dehydrogenase (NCBI)||88, 105|
|RSP_3676||RSP_3676||transcriptional regulator, GntR family (NCBI)||44, 105|
|RSP_3785||RSP_3785||putative bacteriophage-related protein (NCBI)||91, 105|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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