Organism : Rhodobacter sphaeroides 2.4.1 | Module List :
Regulation information for RSP_2751(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for RSP_2751
|Gene||Common Name||Description||Module membership|
|RSP_0116||RSP_0116||hypothetical protein (NCBI)||14, 229|
|RSP_0118||RSP_0118||Cytochrome c oxidase, subunit IIc (NCBI)||77, 229|
|RSP_1262||RSP_1262||response regulator receiver protein (NCBI)||105, 125|
|RSP_1370||RSP_1370||Alpha amylase, catalytic subdomain (NCBI)||124, 229|
|RSP_1450||RSP_1450||Inositol monophosphatase family protein (NCBI)||105, 292|
|RSP_1451||RSP_1451||ABC peptide/nickel/opine transporter, periplasmic substrate-binding protein (NCBI)||17, 105|
|RSP_1453||RSP_1453||ABC peptide/nickel/opine transporter, inner membrane subunit (NCBI)||17, 105|
|RSP_1454||RSP_1454||ABC peptide/nickel/opine transporter, fused ATPase subunits (NCBI)||17, 105|
|RSP_1455||RSP_1455||putative N-carbamoyl-beta-alanine amidohydrolase (NCBI)||17, 105|
|RSP_1456||RSP_1456||hypothetical protein (NCBI)||31, 105|
|RSP_1457||RSP_1457||putative choline kinase (NCBI)||17, 105|
|RSP_1471||RSP_1471||hypothetical protein (NCBI)||140, 229|
|RSP_1796||sodC||Putative Copper/Zinc superoxide dismutase (NCBI)||150, 229|
|RSP_1822||RSP_1822||hypothetical protein (NCBI)||229, 238|
|RSP_1876||RSP_1876||hypothetical protein (NCBI)||105, 353|
|RSP_1951||RSP_1951||hypothetical protein (NCBI)||56, 229|
|RSP_1952||RSP_1952||Cold-shock DNA-binding domain protein (NCBI)||56, 229|
|RSP_2021||shp||Mono-heme class I cytochrome c (NCBI)||150, 229|
|RSP_2022||RSP_2022||Cytochrome b/diheme cytochrome c hybrid protein (NCBI)||103, 229|
|RSP_2023||RSP_2023||hypothetical protein (NCBI)||229, 304|
|RSP_2024||cspA||Cold shock protein cspA (NCBI)||56, 229|
|RSP_2032||RSP_2032||putative hypothetical Gifsy-1 prophage protein (NCBI)||62, 105|
|RSP_2036||RSP_2036||putative ECF/RNA polymerase sigma factor protein (NCBI)||11, 105|
|RSP_2157||RSP_2157||ABC transporter, inner membrane subunit (NCBI)||105, 114|
|RSP_2219||RSP_2219||putative lipid A biosynthesis lauroyl acyltransferase (NCBI)||183, 229|
|RSP_2315||RSP_2315||hypothetical protein (NCBI)||105, 292|
|RSP_2750||RSP_2750||hypothetical protein (NCBI)||77, 105|
|RSP_2751||RSP_2751||hypothetical protein (NCBI)||105, 229|
|RSP_2753||RSP_2753||hypothetical protein (NCBI)||77, 105|
|RSP_2754||RSP_2754||hypothetical protein (NCBI)||105, 116|
|RSP_2807||RSP_2807||putative cytochrome b (NCBI)||14, 229|
|RSP_2808||RSP_2808||hypothetical protein (NCBI)||14, 229|
|RSP_2871||aglG||ABC alpha-glucoside transporter, inner membrane subunit AglG (NCBI)||229, 235|
|RSP_2874||RSP_2874||Putative Beta-glucosidase A (NCBI)||229, 233|
|RSP_2889||RSP_2889||Transcriptional regulator (NCBI)||185, 229|
|RSP_2890||RSP_2890||Copper-translocating P-type ATPase (NCBI)||185, 229|
|RSP_2891||RSP_2891||Putative copper chaperone (NCBI)||185, 229|
|RSP_2964||RSP_2964||hypothetical protein (NCBI)||229, 244|
|RSP_3057||RSP_3057||ABC proline/glycine betaine transporter, ATPase subunit (NCBI)||105, 342|
|RSP_3058||RSP_3058||ABC proline/glycine betaine transporter, inner membrane subunit (NCBI)||105, 342|
|RSP_3059||RSP_3059||ABC proline/glycine betaine transporter, periplasmic substrate-binding protein (NCBI)||105, 342|
|RSP_3106||RSP_3106||Cation efflux transporter, CDF family (NCBI)||105, 288|
|RSP_3151||RSP_3151||ABC nitrate/sulfonate/bicarbonate transporter family, periplasmic substrate-binding protein (NCBI)||105, 110|
|RSP_3152||RSP_3152||ABC nitrate/sulfonate/bicarbonate transporter family, periplasmic substrate-binding protein (NCBI)||88, 105|
|RSP_3154||RSP_3154||ABC nitrate/sulfonate/bicarbonate transporter family, ATPase subunit (NCBI)||105, 251|
|RSP_3421||RSP_3421||hypothetical protein (NCBI)||77, 105|
|RSP_3543||RSP_3543||Probable type I restriction-modification system restriction subunit (NCBI)||191, 229|
|RSP_3574||hutH||putative histidine ammonia-lyase (NCBI)||44, 105|
|RSP_3621||RSP_3621||Cold-shock DNA-binding protein (NCBI)||56, 229|
|RSP_3622||RSP_3622||hypothetical protein (NCBI)||56, 229|
|RSP_3655||RSP_3655||Dihydrodipicolinate synthase/N-acetylneuraminate lyase (NCBI)||105, 157|
|RSP_3656||RSP_3656||NAD-dependent aldehyde dehydrogenases (NCBI)||31, 105|
|RSP_3658||hpcH||putative 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (NCBI)||105, 316|
|RSP_3670||RSP_3670||putative oxidoreductase myo-inositol 2-dehydrogenase (NCBI)||88, 105|
|RSP_3676||RSP_3676||transcriptional regulator, GntR family (NCBI)||44, 105|
|RSP_3785||RSP_3785||putative bacteriophage-related protein (NCBI)||91, 105|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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