Organism : Bacillus subtilis | Module List :
Regulation information for BSU18110(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for BSU18110
|Gene||Common Name||Description||Module membership|
|BSU00440||veg||hypothetical protein (RefSeq)||94, 115|
|BSU03140||tmrB||ATP-binding tunicamycin resistance protein (RefSeq)||94, 115|
|BSU03150||aroK||shikimate kinase (RefSeq)||94, 115|
|BSU03880||yczG||putative transcriptional regulator (ArsR family) (RefSeq)||94, 115|
|BSU04290||ydaL||hypothetical protein (RefSeq)||44, 213|
|BSU04310||ydaN||putative regulator (RefSeq)||44, 213|
|BSU05040||yddN||putative alkanal monooxygenase (RefSeq)||44, 95|
|BSU05390||ydfF||putative transcriptional regulator (RefSeq)||94, 116|
|BSU07970||yfjT||hypothetical protein (RefSeq)||94, 157|
|BSU08520||recX||recombination regulator RecX (RefSeq)||94, 258|
|BSU08530||yfhH||hypothetical protein (RefSeq)||94, 270|
|BSU09500||yhdK||negative regulator of the activity of sigma-M (RefSeq)||38, 44|
|BSU09610||yhdV||integral membrane protein possibly involved in chromosome condensation (RefSeq)||94, 258|
|BSU10010||trpP||tryptophan transporter (RefSeq)||64, 94|
|BSU12820||spoIISB||two-component apoptotic control system component B (RefSeq)||94, 215|
|BSU12830||spoIISA||two-component apoptosis factor (RefSeq)||94, 215|
|BSU13770||ykvO||putative oxidoreductase (RefSeq)||44, 216|
|BSU13790||ykvQ||putative sporulation-specific glycosylase (RefSeq)||44, 291|
|BSU13980||pbpH||penicillin-binding enzyme for formation of rod-shaped peptidoglycan cell wall (RefSeq)||70, 94|
|BSU14840||ylaN||hypothetical protein (RefSeq)||94, 310|
|BSU17300||ebrA||small multidrug resistance efflux transporter (RefSeq)||38, 44|
|BSU17410||cwlC||N-acetylmuramoyl-L-alanine amidase (RefSeq)||44, 283|
|BSU17670||cotU||spore coat protein (RefSeq)||44, 200|
|BSU17770||yndF||putative spore germination lipoprotein (RefSeq)||44, 301|
|BSU18110||ynfC||hypothetical protein (RefSeq)||44, 94|
|BSU18180||yngB||putative UTP-sugar-phosphate uridylyltransferase (RefSeq)||44, 52|
|BSU18390||yoeC||putative bacteriophage integrase (RefSeq)||94, 157|
|BSU18740||yozG||putative transcriptional regulator (RefSeq)||44, 47|
|BSU19300||yozC||hypothetical protein (RefSeq)||94, 215|
|BSU20710||yopZ||conserved hypothetical protein; phage SPbeta (RefSeq)||44, 52|
|BSU21910||metA||homoserine O-succinyltransferase (RefSeq)||94, 327|
|BSU22980||ypbG||putative phosphoesterase (RefSeq)||94, 258|
|BSU23040||fer||ferredoxin (RefSeq)||94, 151|
|BSU23230||ypuF||hypothetical protein (RefSeq)||94, 226|
|BSU23240||ypzK||putative acetyltransferase (RefSeq)||94, 208|
|BSU23310||sipS||type I signal peptidase (RefSeq)||94, 159|
|BSU23830||yqjL||putative hydrolase (RefSeq)||94, 217|
|BSU24200||yqiH||putative lipoprotein (RefSeq)||44, 52|
|BSU25900||cwlA||N-acetylmuramoyl-L-alanine amidase; skin element (RefSeq)||44, 206|
|BSU25910||yqxH||putative holin; skin element (RefSeq)||44, 206|
|BSU26410||yrkR||phosphate-starvation-inducible protein PsiE (RefSeq)||44, 129|
|BSU26430||yrkP||two-component response regulator [YrkQ] (RefSeq)||44, 129|
|BSU26440||yrkO||putative integral inner membrane protein (RefSeq)||44, 129|
|BSU26490||yrkJ||putative integral inner membrane protein (RefSeq)||44, 71|
|BSU26500||yrkI||hypothetical protein (RefSeq)||44, 71|
|BSU26510||yrkH||putative hydrolase (RefSeq)||44, 71|
|BSU26530||yrkF||putative rhodanese-related sulfur transferase (RefSeq)||44, 71|
|BSU26790||aadK||aminoglycoside 6-adenylyltransferase (RefSeq)||94, 404|
|BSU26800||yrpB||putative anionic nitroalkane dioxygenase (RefSeq)||35, 94|
|BSU26840||sigZ||RNA polymerase sigma factor SigZ (RefSeq)||44, 206|
|BSU27150||yrhK||hypothetical protein (RefSeq)||44, 387|
|BSU29000||nrdR||transcriptional regulator NrdR (RefSeq)||94, 270|
|BSU35040||yvnB||putative exported phosphohydrolase (RefSeq)||44, 238|
|BSU35870||pgsE||factor required for polyglutamate synthesis (RefSeq)||44, 61|
|BSU38390||ywbA||putative phosphotransferase system enzyme IIC permease component (RefSeq)||44, 130|
|BSU38450||ywaE||putative transcriptional regulator (MarR family) (RefSeq)||94, 341|
|BSU38480||ywaC||(p)ppGpp synthetase (RefSeq)||71, 94|
|BSU40240||yycS||putative integrase/transposase (RefSeq)||44, 285|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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CircVisOur circular module explorer is adapted from visquick originally developed by Dick Kreisberg of Ilya Shmulevich lab at ISB for The Cancer Genome Atlas. We use simplified version of visquick to display distribution of module members and their interactions across the genome. This view provides summary of regulation information for a gene. The main components are;
- 1. All genomic elements for the organism are represented as a circle and each element is separated by black tick marks. In this example chromosome and pDV represent main chromosome and plasmid for D. vulgaris Hildenborough, respectively.
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