Organism : Clostridium acetobutylicum | Module List :
Predicted N6-adenine-specific DNA methylase (NCBI ptt file)
Functional Annotations (4)
|Predicted N6-adenine-specific DNA methylase||cog/ cog|
|nucleic acid binding||go/ molecular_function|
|methyltransferase activity||go/ molecular_function|
Regulation information for CAC0223(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Functional Enrichment for CAC0223
Module neighborhood information for CAC0223
|Gene||Common Name||Description||Module membership|
|CAC0038||CAC0038||Hypothetical protein (NCBI ptt file)||44, 258|
|CAC0039||CAC0039||DNA segregation ATPase FtsK/SpoIIIE family protein, contains FHA domain (NCBI ptt file)||258, 333|
|CAC0223||CAC0223||Predicted N6-adenine-specific DNA methylase (NCBI ptt file)||65, 258|
|CAC0250||CAC0250||Methyl-accepting chemotaxis protein (NCBI ptt file)||207, 258|
|CAC0335||CAC0335||Hypothetical protein, CF-7 family (NCBI ptt file)||65, 230|
|CAC0343||CAC0343||Hypothetical protein, CF-23 family (NCBI ptt file)||190, 258|
|CAC0355||CAC0355||Putative polygalacturonase (pectinase) (NCBI ptt file)||100, 258|
|CAC0361||kduD||2 deoxy-D-gluconate 3-dehydrogenase (NCBI ptt file)||65, 240|
|CAC0395||kdgK||2-keto-3-deoxygluconate kinase (gene kdgK) (NCBI ptt file)||43, 65|
|CAC0399||CAC0399||Hypothetical protein, CF-24 family (NCBI ptt file)||258, 264|
|CAC0410||CAC0410||Uncharacterized small conserved protein, homolog of YUKE/YFJA (NCBI ptt file)||258, 264|
|CAC0477||CAC0477||AP superfamily (NCBI ptt file)||247, 258|
|CAC0485||CAC0485||TRNA-processing ribonuclease BN (NCBI ptt file)||137, 258|
|CAC0509||CAC0509||PHP family protein (NCBI ptt file)||44, 258|
|CAC0534||pps||Phosphoenolpyruvate synthase (gene pps) (NCBI ptt file)||65, 301|
|CAC0568||asd||Aspartate semialdehyde dehydrogenase (gene asd) (NCBI ptt file)||26, 258|
|CAC0705||CAC0705||Sugar ABC transporter, permease protein (NCBI ptt file)||65, 123|
|CAC0843||CAC0843||Ribonuclease precursor (barnase), secreted. (NCBI ptt file)||65, 67|
|CAC0845||CAC0845||Ferritin-like protein Rsg (NCBI ptt file)||65, 363|
|CAC0864||CAC0864||Histidine kinase-like ATPase (NCBI ptt file)||65, 258|
|CAC0887||adeC||Adenine deaminase (NCBI ptt file)||65, 241|
|CAC0905||CAC0905||Uncharacterized NAD(FAD)-dependent dehydrogenase (NCBI ptt file)||65, 154|
|CAC0991||CAC0991||Putative intracellular protease (NCBI ptt file)||254, 258|
|CAC1071||CAC1071||Transcriptional regulator, AcrR family (NCBI ptt file)||65, 357|
|CAC1256||CAC1256||Ribonucleases G/E family protein (NCBI ptt file)||84, 258|
|CAC1372||cobT||Cobalamin biosynthesis enzyme CobT (NCBI ptt file)||55, 65|
|CAC1954||CAC1954||Hypothetical protein (NCBI ptt file)||22, 258|
|CAC2032||CAC2032||Hypothetical protein (NCBI ptt file)||3, 258|
|CAC2168||CAC2168||Uncharacterized conserved protein (NCBI ptt file)||258, 345|
|CAC2420||CAC2420||Methyl-accepting chemotaxis protein (NCBI ptt file)||65, 357|
|CAC2495||CAC2495||Predicted transcriptional regulator (NCBI ptt file)||258, 326|
|CAC2503||CAC2503||Hypothetical protein (NCBI ptt file)||65, 208|
|CAC2547||CAC2547||Possible membrane-associated methyl-accepting chemotaxis protein fused to HAMP domain (NCBI ptt file)||145, 258|
|CAC2550||CAC2550||Hypothetical protein (NCBI ptt file)||3, 258|
|CAC2596||CAC2596||Rieske FeS-domain containing oxidoreductase (NCBI ptt file)||65, 150|
|CAC2811||CAC2811||Hypothetical protein, CF-17 family (NCBI ptt file)||123, 258|
|CAC2823||CAC2823||Hypothetical protein (NCBI ptt file)||258, 341|
|CAC2939||CAC2939||Response regulator (CheY-like receiver domain and HTH-type DNA-binding domain) (NCBI ptt file)||258, 351|
|CAC2947||topB||Topoisomerase B (NCBI ptt file)||65, 154|
|CAC3003||thyA||Thymidylate synthase (NCBI ptt file)||100, 258|
|CAC3004||folA||Dihydrofolate reductase (NCBI ptt file)||255, 258|
|CAC3011||CAC3011||Predicted membrane protein (NCBI ptt file)||65, 115|
|CAC3035||CAC3035||HAD superfamily hydrolase (NCBI ptt file)||65, 338|
|CAC3277||nrdA||Ribonucleotide reductase alpha subunit (NCBI ptt file)||244, 258|
|CAC3571||fabZ||Hydroxymyristoyl-(acyl carrier protein) dehydratase (NCBI ptt file)||65, 91|
|CAC3642||CAC3642||Oligopeptide ABC transporter, ATPase component (NCBI ptt file)||65, 217|
|CAC3669||CAC3669||Transcriptional regulator, MarR/EmrR family (NCBI ptt file)||65, 137|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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CircVisOur circular module explorer is adapted from visquick originally developed by Dick Kreisberg of Ilya Shmulevich lab at ISB for The Cancer Genome Atlas. We use simplified version of visquick to display distribution of module members and their interactions across the genome. This view provides summary of regulation information for a gene. The main components are;
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