Organism : Clostridium acetobutylicum | Module List :
Regulation information for CAC0419(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for CAC0419
|Gene||Common Name||Description||Module membership|
|CAC0122||cheY||Chemotaxis respons regulator (cheY) (NCBI ptt file)||167, 247|
|CAC0132||CAC0132||Hypothetical protein (NCBI ptt file)||247, 270|
|CAC0134||CAC0134||Hypothetical protein, CF-19 family (NCBI ptt file)||62, 247|
|CAC0135||CAC0135||Hypothetical protein, CF-23 family (NCBI ptt file)||13, 247|
|CAC0349||CAC0349||Predicted membrane protein (NCBI ptt file)||246, 351|
|CAC0419||CAC0419||Predicted membrane protein (NCBI ptt file)||247, 351|
|CAC0420||CAC0420||Conserved membrane protein, possible homolog of CAAX-like membrane endopeptidase (NCBI ptt file)||185, 247|
|CAC0477||CAC0477||AP superfamily (NCBI ptt file)||247, 258|
|CAC0487||CAC0487||Uncharacterized protein, ortholog of Thermotoga maritima (4981823) (NCBI ptt file)||247, 259|
|CAC0626||trpS||Tryptophan-tRNA synthetase, trpS (NCBI ptt file)||247, 296|
|CAC0698||CAC0698||Predicted hydrolase of the HAD superfamily (NCBI ptt file)||217, 351|
|CAC1060||CAC1060||Predicted membrane protein (NCBI ptt file)||336, 351|
|CAC1064||CAC1064||TPR-repeat-containing protein (NCBI ptt file)||49, 351|
|CAC1163||CAC1163||Hypothetical protein (NCBI ptt file)||16, 351|
|CAC1167||CAC1167||Hypothetical protein (NCBI ptt file)||246, 351|
|CAC1213||CAC1213||Predicted membrane protein (NCBI ptt file)||246, 351|
|CAC1409||CAC1409||Predicted membrane protein (NCBI ptt file)||78, 351|
|CAC1495||CAC1495||Enzyme of dihydrofolate reductase family, ortholog YWFD B.subtilis (NCBI ptt file)||5, 247|
|CAC1500||CAC1500||Predicted membrane protein (NCBI ptt file)||13, 351|
|CAC1517||CAC1517||Membrane associated sensory transduction histidine kinase (NCBI ptt file)||140, 351|
|CAC1848||cmk||Cytidylate kinase (NCBI ptt file)||35, 351|
|CAC1972||CAC1972||Predicted membrane protein (NCBI ptt file)||191, 351|
|CAC2188||CAC2188||Protein containing a domain related to multimeric flavodoxin WrbA family (NCBI ptt file)||351, 355|
|CAC2242||CAC2242||Predicted transcriptional regulator, arsE family (NCBI ptt file)||214, 247|
|CAC2259||CAC2259||Predicted transcriptional regulator of MarR-family (NCBI ptt file)||270, 351|
|CAC2322||CAC2322||Hypothetical protein (NCBI ptt file)||4, 351|
|CAC2341||CAC2341||Collagenase family protease (NCBI ptt file)||51, 351|
|CAC2559||CAC2559||Hypothetical protein (NCBI ptt file)||183, 351|
|CAC2566||CAC2566||Possible rRNA methylase (SAM-dependent methyltransferase superfamily), YTQB B.subtilis (NCBI ptt file)||58, 351|
|CAC2698||CAC2698||Hypothetical protein (NCBI ptt file)||5, 351|
|CAC2824||CAC2824||N-terminal HKD family nuclease fused to DNA/RNA helicases of superfamily II,conserved in Streptomyces (NCBI ptt file)||154, 247|
|CAC2900||splB||Spore photoproduct lyase, SPL related protein (NCBI ptt file)||132, 351|
|CAC2901||CAC2901||Predicted membrane protein (NCBI ptt file)||298, 351|
|CAC2902||CAC2902||Isopentenyl monophosphate kinase, IPK (NCBI ptt file)||66, 247|
|CAC2939||CAC2939||Response regulator (CheY-like receiver domain and HTH-type DNA-binding domain) (NCBI ptt file)||258, 351|
|CAC2973||kdgA||2-keto-3-deoxy-6-phosphogluconate aldolase, eda/kdgA (NCBI ptt file)||108, 247|
|CAC3232||CAC3232||Hypothetical protein (NCBI ptt file)||62, 247|
|CAC3236||CAC3236||Possible transcriptional regulator from YAEG/LRPR family (NCBI ptt file)||247, 312|
|CAC3380||CAC3380||Metallo-beta-lactamase superfamily hydrolase (NCBI ptt file)||108, 247|
|CAC3391||CAC3391||Membrane associated signal transduction histidine kinase (NCBI ptt file)||51, 351|
|CAC3404||CAC3404||Uncharactecterized conserved membrane protein, possible ABC-type MDR permease (NCBI ptt file)||246, 351|
|CAC3481||CAC3481||Transcriptional regulator, AcrR family (NCBI ptt file)||167, 247|
|CAC3524||CAC3524||Hypothetical protein, CF-7 family (NCBI ptt file)||226, 247|
|CAC3531||CAC3531||IS605/IS200-like transposase (NCBI ptt file)||190, 247|
|CAC3562||CAC3562||HD superfamily hydrolase (NCBI ptt file)||127, 247|
|CAC3563||CAC3563||Mismatch repair protein MutS-like ATPase (NCBI ptt file)||247, 335|
|CAC3649||spoVT||Possible stage V sporulation protein T, transcriptional regulator AbrB homolog (NCBI ptt file)||108, 247|
|CAC3677||kdpE||KDP operon transcriptional regulatory protein KdpE (CheY-like receiver domain and HTH-type DNA-binding domain) (NCBI ptt file)||108, 247|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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