Organism : Clostridium acetobutylicum | Module List :
Regulation information for CAC1526(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for CAC1526
|Gene||Common Name||Description||Module membership|
|CAC0004||recF||RecF, ABC family ATPase (NCBI ptt file)||26, 272|
|CAC0093||CAC0093||Transcriptional regulators, LysR family (NCBI ptt file)||216, 301|
|CAC0154||MtlA||PTS system, mannitol-specific IIBC component (gene MtlA) (NCBI ptt file)||301, 342|
|CAC0332||manB||Beta-mannanase (NCBI ptt file)||191, 301|
|CAC0388||CAC0388||Hypothetical protein (NCBI ptt file)||301, 361|
|CAC0534||pps||Phosphoenolpyruvate synthase (gene pps) (NCBI ptt file)||65, 301|
|CAC0568||asd||Aspartate semialdehyde dehydrogenase (gene asd) (NCBI ptt file)||26, 258|
|CAC0695||CAC0695||Altronate oxidoreductase (NCBI ptt file)||170, 301|
|CAC0915||CAC0915||Endoglucanase A precursor (endo-1,4-beta-glucanase) (cellulase A), secreted; dockerin domain (NCBI ptt file)||26, 312|
|CAC1089||CAC1089||Serine kinase/phosphatase HPr (NCBI ptt file)||26, 159|
|CAC1140||CAC1140||Hypothetical protein (NCBI ptt file)||16, 301|
|CAC1162||CAC1162||Hypothetical protein, CF-11 family (NCBI ptt file)||26, 328|
|CAC1166||CAC1166||Hypothetical protein (NCBI ptt file)||26, 328|
|CAC1228||cisA||Site-specific DNA recombinase (NCBI ptt file)||26, 53|
|CAC1452||CAC1452||MDR-type permease (NCBI ptt file)||26, 53|
|CAC1477||CAC1477||Hypothetical protein (NCBI ptt file)||272, 301|
|CAC1526||CAC1526||Amidase, related to GSP of E.coli (NCBI ptt file)||26, 301|
|CAC1527||CAC1527||Spore germination protein GerKB (NCBI ptt file)||26, 183|
|CAC1605||arbA||Ketopantoate reductase (NCBI ptt file)||26, 298|
|CAC1676||CAC1676||Uncharacterized conserved protein (NCBI ptt file)||301, 332|
|CAC1844||CAC1844||Hypothetical protein (NCBI ptt file)||26, 123|
|CAC1861||CAC1861||Fragment flavodoxin oxidoreductase (NCBI ptt file)||26, 244|
|CAC1867||CAC1867||Transcriptional regulator (phage-related) (Xre family) (NCBI ptt file)||301, 342|
|CAC2056||CAC2056||Hypothetical protein (NCBI ptt file)||26, 359|
|CAC2114||CAC2114||Predicted pseudouridylate synthase, YLYB B.subtilis ortholog (NCBI ptt file)||26, 270|
|CAC2189||CAC2189||Carbamoylphosphate synthase large subunit, short form (NCBI ptt file)||26, 119|
|CAC2224||cheW||Chemotaxis protein CheW (NCBI ptt file)||26, 339|
|CAC2247||CAC2247||Site-specific recombinase, DNA invertase Pin homolog (NCBI ptt file)||270, 301|
|CAC2284||ruvB||Holliday junction specific DNA helicase, subunit ruvB (NCBI ptt file)||26, 229|
|CAC2333||spsI||DTDP-glucose pyrophosphorylase (NCBI ptt file)||26, 172|
|CAC2489||CAC2489||Predicted membrane protein (NCBI ptt file)||11, 26|
|CAC2509||CAC2509||Predicted acetyltransferase (NCBI ptt file)||165, 301|
|CAC2540||CAC2540||Co/Zn/Cd efflux system component (NCBI ptt file)||207, 301|
|CAC2600||CAC2600||Predicted membrane protein (NCBI ptt file)||300, 301|
|CAC2655||CAC2655||Uncharacterized membrane-associated protein, DedA family (NCBI ptt file)||26, 359|
|CAC2715||CAC2715||Hypothetical protein (NCBI ptt file)||26, 53|
|CAC2743||CAC2743||Predicted permease, YXIO B.subtilis ortholog (NCBI ptt file)||26, 240|
|CAC2762||CAC2762||Polyferredoxin (NCBI ptt file)||26, 150|
|CAC2822||CAC2822||TPR-repeat-containing protein (NCBI ptt file)||165, 301|
|CAC3164||CAC3164||Lysine-specific permease (NCBI ptt file)||265, 301|
|CAC3237||msmX||Multiple sugar-binding ABC-transporter, MSMX ATP-binding protein (NCBI ptt file)||301, 312|
|CAC3241||CAC3241||Uncharacterized conserved membrane protein, YYAD B.subtilis ortholog (NCBI ptt file)||150, 301|
|CAC3242||CAC3242||Uncharacterized Fe-S protein, PflX (pyruvate formate lyase activating protein) homolog (NCBI ptt file)||72, 301|
|CAC3451||CAC3451||Sugar/Na+(H+) simporter (NCBI ptt file)||170, 301|
|CAC3468||uvrC||Excinuclease ABC, subunit C (uvrC) (NCBI ptt file)||207, 301|
|CAC3471||CAC3471||GMP reductase (NCBI ptt file)||223, 301|
|CAC3479||CAC3479||Hypothetical protein (NCBI ptt file)||26, 68|
|CAC3490||CAC3490||DNA gyrase inhibitory protein, GyrI (NCBI ptt file)||205, 301|
|CAC3554||CAC3554||Siderophore/Surfactin synthetase related protein (NCBI ptt file)||26, 208|
|CAC3590||CAC3590||Predicted flavoprotein, YhiN family (NCBI ptt file)||174, 301|
|CAC3609||CAC3609||ABC-type MDR transport system, permease component (NCBI ptt file)||26, 150|
|CAC3644||CAC3644||Oligopeptide ABC transporter, permease component (NCBI ptt file)||217, 301|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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