Organism : Clostridium acetobutylicum | Module List :
Regulation information for CAC2743(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Functional Enrichment for CAC2743
Module neighborhood information for CAC2743
|Gene||Common Name||Description||Module membership|
|CAC0004||recF||RecF, ABC family ATPase (NCBI ptt file)||26, 272|
|CAC0361||kduD||2 deoxy-D-gluconate 3-dehydrogenase (NCBI ptt file)||65, 240|
|CAC0568||asd||Aspartate semialdehyde dehydrogenase (gene asd) (NCBI ptt file)||26, 258|
|CAC0720||CAC0720||Hypothetical protein (NCBI ptt file)||223, 240|
|CAC0762||CAC0762||Permease, probably tetracycline resistance protein (NCBI ptt file)||169, 240|
|CAC0915||CAC0915||Endoglucanase A precursor (endo-1,4-beta-glucanase) (cellulase A), secreted; dockerin domain (NCBI ptt file)||26, 312|
|CAC0923||CAC0923||Predicted membrane protein; CF_1 family (NCBI ptt file)||148, 240|
|CAC1057||CAC1057||Uncharcterized protein, shares conserved domain among different RHS family proteins and WAPA of B.subtilis (NCBI ptt file)||224, 240|
|CAC1089||CAC1089||Serine kinase/phosphatase HPr (NCBI ptt file)||26, 159|
|CAC1162||CAC1162||Hypothetical protein, CF-11 family (NCBI ptt file)||26, 328|
|CAC1166||CAC1166||Hypothetical protein (NCBI ptt file)||26, 328|
|CAC1228||cisA||Site-specific DNA recombinase (NCBI ptt file)||26, 53|
|CAC1452||CAC1452||MDR-type permease (NCBI ptt file)||26, 53|
|CAC1497||CAC1497||Uncharacterized protein, homolog of YCGL B.subtilis (NCBI ptt file)||216, 240|
|CAC1511||CAC1511||FNR-like catabolite gene activator (c-AMP binding domain) (NCBI ptt file)||38, 240|
|CAC1512||nirC||Formate/nitrite family of transporter (NCBI ptt file)||240, 320|
|CAC1513||asrA||Anaerobic sulfite reductase (Fe-S subunit) (NCBI ptt file)||208, 240|
|CAC1515||asrC||Anaerobic sulfite reduction protein C, reductase (NCBI ptt file)||111, 240|
|CAC1526||CAC1526||Amidase, related to GSP of E.coli (NCBI ptt file)||26, 301|
|CAC1527||CAC1527||Spore germination protein GerKB (NCBI ptt file)||26, 183|
|CAC1605||arbA||Ketopantoate reductase (NCBI ptt file)||26, 298|
|CAC1648||CAC1648||Hypothetical protein, CF-7 family (NCBI ptt file)||206, 240|
|CAC1844||CAC1844||Hypothetical protein (NCBI ptt file)||26, 123|
|CAC1861||CAC1861||Fragment flavodoxin oxidoreductase (NCBI ptt file)||26, 244|
|CAC2056||CAC2056||Hypothetical protein (NCBI ptt file)||26, 359|
|CAC2114||CAC2114||Predicted pseudouridylate synthase, YLYB B.subtilis ortholog (NCBI ptt file)||26, 270|
|CAC2189||CAC2189||Carbamoylphosphate synthase large subunit, short form (NCBI ptt file)||26, 119|
|CAC2224||cheW||Chemotaxis protein CheW (NCBI ptt file)||26, 339|
|CAC2284||ruvB||Holliday junction specific DNA helicase, subunit ruvB (NCBI ptt file)||26, 229|
|CAC2333||spsI||DTDP-glucose pyrophosphorylase (NCBI ptt file)||26, 172|
|CAC2455||CAC2455||Hypothetical protein, CF-13 family (NCBI ptt file)||202, 240|
|CAC2489||CAC2489||Predicted membrane protein (NCBI ptt file)||11, 26|
|CAC2539||CAC2539||Predicted acetyltransferase (NCBI ptt file)||240, 265|
|CAC2589||CAC2589||Glycosyltransferase (NCBI ptt file)||169, 240|
|CAC2592||CAC2592||6-pyruvoyl-tetrahydropterin synthase related domain; conserved membrane protein (NCBI ptt file)||24, 240|
|CAC2655||CAC2655||Uncharacterized membrane-associated protein, DedA family (NCBI ptt file)||26, 359|
|CAC2715||CAC2715||Hypothetical protein (NCBI ptt file)||26, 53|
|CAC2742||CAC2742||Predicted membrane protein (NCBI ptt file)||206, 240|
|CAC2743||CAC2743||Predicted permease, YXIO B.subtilis ortholog (NCBI ptt file)||26, 240|
|CAC2762||CAC2762||Polyferredoxin (NCBI ptt file)||26, 150|
|CAC3261||ada||Methylated DNA-protein cysteine methyltransferase (NCBI ptt file)||240, 265|
|CAC3301||gerKB||Spore germination protein GerKB, membrane protein (NCBI ptt file)||24, 240|
|CAC3361||CAC3361||Transcriptional regulator, LysR family (NCBI ptt file)||150, 240|
|CAC3368||CAC3368||Predicted permease (NCBI ptt file)||148, 240|
|CAC3370||CAC3370||Predicted transcriptional regulator (NCBI ptt file)||150, 240|
|CAC3479||CAC3479||Hypothetical protein (NCBI ptt file)||26, 68|
|CAC3482||CAC3482||Predicted permease (NCBI ptt file)||240, 338|
|CAC3503||CAC3503||Nucleoside-diphosphate-sugar epimerase (NCBI ptt file)||83, 240|
|CAC3508||CAC3508||Predicted aminopeptidase (NCBI ptt file)||240, 356|
|CAC3554||CAC3554||Siderophore/Surfactin synthetase related protein (NCBI ptt file)||26, 208|
|CAC3609||CAC3609||ABC-type MDR transport system, permease component (NCBI ptt file)||26, 150|
|CAC3663||CAC3663||Response regulator (CheY-like receiver domain and HTH-type DNA-binding domain) (NCBI ptt file)||202, 240|
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If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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