Organism : Geobacter sulfurreducens | Module List :
Regulation information for GSU1042(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Functional Enrichment for GSU1042
Module neighborhood information for GSU1042
|Gene||Common Name||Description||Module membership|
|GSU0273||GSU0273||radical SAM domain protein (NCBI)||249, 278|
|GSU0295||cheR-1||chemotaxis protein methyltransferase CheR (NCBI)||278, 338|
|GSU0314||GSU0314||general secretion protein E N-terminal domain protein (NCBI)||79, 278|
|GSU0352||psaD||thiol peroxidase (NCBI)||130, 315|
|GSU0413||fliI||flagellum-specific ATP synthase FliI (NCBI)||186, 278|
|GSU0427||GSU0427||lipoprotein, putative (VIMSS)||96, 278|
|GSU0428||GSU0428||lipoprotein, putative (VIMSS)||21, 278|
|GSU0431||GSU0431||conserved hypothetical protein (VIMSS)||96, 130|
|GSU0432||GSU0432||conserved hypothetical protein (VIMSS)||96, 278|
|GSU0480||GSU0480||NifU-like domain protein (NCBI)||130, 178|
|GSU0502||GSU0502||lipoprotein, putative (VIMSS)||130, 322|
|GSU0512||GSU0512||conserved hypothetical protein (VIMSS)||8, 278|
|GSU0608||GSU0608||conserved domain protein (NCBI)||130, 231|
|GSU0705||GSU0705||cytochrome c biogenesis protein, CcmF/CcyK/CcsA family (VIMSS)||36, 278|
|GSU0758||GSU0758||membrane protein, putative (VIMSS)||181, 278|
|GSU0759||GSU0759||hypothetical protein (VIMSS)||260, 278|
|GSU0763||GSU0763||helicase, putative (NCBI)||130, 180|
|GSU0833||GSU0833||hypothetical protein (VIMSS)||180, 278|
|GSU1042||GSU1042||conserved hypothetical protein (NCBI)||130, 278|
|GSU1156||asnS||asparaginyl-tRNA synthetase (NCBI)||104, 278|
|GSU1164||GSU1164||ABC transporter, permease protein (VIMSS)||130, 278|
|GSU1268||GSU1268||transcriptional regulator, LysR family (VIMSS)||130, 190|
|GSU1281||nikO||component of nickel ABC transport system (Dmitry Rodionov)||181, 278|
|GSU1384||cas3||CRISPR-associated helicase Cas3 (NCBI)||94, 130|
|GSU1388||GSU1388||CRISPR-associated protein, CT1976 family (NCBI)||36, 130|
|GSU1391||GSU1391||Fic family protein (NCBI)||249, 278|
|GSU1581||GSU1581||polyA polymerase family protein (NCBI)||130, 180|
|GSU1611||GSU1611||AcrB/AcrD/AcrF family protein (VIMSS)||278, 338|
|GSU1991||GSU1991||CAAX amino terminal protease family protein (NCBI)||222, 278|
|GSU2114||GSU2114||hypothetical protein (VIMSS)||278, 338|
|GSU2117||GSU2117||hypothetical protein (VIMSS)||181, 278|
|GSU2123||GSU2123||HD domain protein (NCBI)||104, 278|
|GSU2163||GSU2163||hypothetical protein (VIMSS)||181, 278|
|GSU2274||fbP-2||FKBP-type peptidyl-prolyl cis-trans isomerase (NCBI)||15, 278|
|GSU2295||GSU2295||hypothetical protein (VIMSS)||141, 278|
|GSU2309||GSU2309||metallo-beta-lactamase family protein (VIMSS)||96, 130|
|GSU2310||GSU2310||YeeE/YedE family protein (NCBI)||130, 269|
|GSU2311||GSU2311||YeeE/YedE family protein (NCBI)||115, 130|
|GSU2312||GSU2312||sulfate transporter family protein (VIMSS)||130, 181|
|GSU2385||GSU2385||hypothetical protein (VIMSS)||82, 278|
|GSU2402||GSU2402||hypothetical protein (VIMSS)||84, 278|
|GSU2533||GSU2533||hypothetical protein (VIMSS)||224, 278|
|GSU2748||GSU2748||cytochrome c family protein, putative (NCBI)||103, 130|
|GSU2749||GSU2749||NOL1/NOP2/sun family protein (VIMSS)||130, 140|
|GSU2779||GSU2779||transcriptional regulator, MerR family (VIMSS)||130, 148|
|GSU2781||GSU2781||efflux transporter, RND family, MFP subunit (NCBI)||130, 296|
|GSU2782||GSU2782||AcrB/AcrD/AcrF family protein (VIMSS)||278, 296|
|GSU2890||GSU2890||cytochrome c biogenesis protein, CcmF/CcyK/CcsA family (VIMSS)||130, 300|
|GSU2892||GSU2892||hypothetical protein (VIMSS)||124, 130|
|GSU2893||GSU2893||hypothetical protein (VIMSS)||130, 140|
|GSU2950||GSU2950||ABC transporter, permease protein (VIMSS)||103, 130|
|GSU2951||GSU2951||ABC transporter, ATP-binding protein (VIMSS)||130, 146|
|GSU3031||GSU3031||sigma-54 dependent transcriptional regulator (VIMSS)||69, 278|
|GSU3118||regX3||DNA-binding response regulator (NCBI)||253, 278|
|GSU3119||GSU3119||sensor histidine kinase (VIMSS)||180, 278|
|GSU3166||GSU3166||conserved hypothetical protein (VIMSS)||130, 322|
|GSU3167||GSU3167||hypothetical protein (VIMSS)||70, 130|
|GSU3168||GSU3168||beta-ketoacyl synthase domain protein (NCBI)||130, 337|
|GSU3179||GSU3179||conserved domain protein (NCBI)||105, 130|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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Identity of gene members in a module may help to identify potential interactions between different functional modules. Therefore, neighbor genes that share the same module(s) with gene under consideration are shown here. For each memebr, gene name, description and modules that contain it are listed.
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CircVisOur circular module explorer is adapted from visquick originally developed by Dick Kreisberg of Ilya Shmulevich lab at ISB for The Cancer Genome Atlas. We use simplified version of visquick to display distribution of module members and their interactions across the genome. This view provides summary of regulation information for a gene. The main components are;
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