Organism : Geobacter sulfurreducens | Module List :
Regulation information for GSU2123(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for GSU2123
|Gene||Common Name||Description||Module membership|
|GSU0273||GSU0273||radical SAM domain protein (NCBI)||249, 278|
|GSU0277||GSU0277||ABC transporter, ATP-binding/permease protein (VIMSS)||104, 304|
|GSU0295||cheR-1||chemotaxis protein methyltransferase CheR (NCBI)||278, 338|
|GSU0314||GSU0314||general secretion protein E N-terminal domain protein (NCBI)||79, 278|
|GSU0413||fliI||flagellum-specific ATP synthase FliI (NCBI)||186, 278|
|GSU0427||GSU0427||lipoprotein, putative (VIMSS)||96, 278|
|GSU0428||GSU0428||lipoprotein, putative (VIMSS)||21, 278|
|GSU0432||GSU0432||conserved hypothetical protein (VIMSS)||96, 278|
|GSU0459||GSU0459||Beta-ketoacyl synthase domain protein (VIMSS)||104, 218|
|GSU0512||GSU0512||conserved hypothetical protein (VIMSS)||8, 278|
|GSU0523||pabB||para-aminobenzoate synthase, component I (NCBI)||71, 104|
|GSU0705||GSU0705||cytochrome c biogenesis protein, CcmF/CcyK/CcsA family (VIMSS)||36, 278|
|GSU0747||GSU0747||conserved hypothetical protein (VIMSS)||104, 232|
|GSU0758||GSU0758||membrane protein, putative (VIMSS)||181, 278|
|GSU0759||GSU0759||hypothetical protein (VIMSS)||260, 278|
|GSU0770||GSU0770||transcriptional regulator, TetR family (VIMSS)||104, 118|
|GSU0833||GSU0833||hypothetical protein (VIMSS)||180, 278|
|GSU0913||GSU0913||ABC transporter, ATP-binding protein (VIMSS)||104, 232|
|GSU0931||GSU0931||Rhodanese-like domain protein (VIMSS)||104, 226|
|GSU1042||GSU1042||conserved hypothetical protein (NCBI)||130, 278|
|GSU1156||asnS||asparaginyl-tRNA synthetase (NCBI)||104, 278|
|GSU1164||GSU1164||ABC transporter, permease protein (VIMSS)||130, 278|
|GSU1251||GSU1251||BNR repeat domain protein (VIMSS)||66, 104|
|GSU1252||GSU1252||conserved domain protein (NCBI)||66, 104|
|GSU1253||GSU1253||hypothetical protein (VIMSS)||66, 104|
|GSU1254||GSU1254||hypothetical protein (VIMSS)||6, 104|
|GSU1255||GSU1255||conserved hypothetical protein (NCBI)||95, 104|
|GSU1257||GSU1257||ABC transporter, periplasmic-substrate binding protein, putative (VIMSS)||104, 232|
|GSU1281||nikO||component of nickel ABC transport system (Dmitry Rodionov)||181, 278|
|GSU1391||GSU1391||Fic family protein (NCBI)||249, 278|
|GSU1435||GSU1435||peptide ABC transporter, permease protein (VIMSS)||104, 338|
|GSU1551||GSU1551||bacterial signal domain protein (VIMSS)||104, 244|
|GSU1611||GSU1611||AcrB/AcrD/AcrF family protein (VIMSS)||278, 338|
|GSU1711||GSU1711||integrative genetic element Gsu5, resolvase (VIMSS)||45, 104|
|GSU1723||GSU1723||mechanosensitive ion channel family protein (NCBI)||104, 294|
|GSU1991||GSU1991||CAAX amino terminal protease family protein (NCBI)||222, 278|
|GSU2041||GSU2041||sigma-54 dependent DNA-binding response regulator (VIMSS)||71, 104|
|GSU2114||GSU2114||hypothetical protein (VIMSS)||278, 338|
|GSU2117||GSU2117||hypothetical protein (VIMSS)||181, 278|
|GSU2123||GSU2123||HD domain protein (NCBI)||104, 278|
|GSU2163||GSU2163||hypothetical protein (VIMSS)||181, 278|
|GSU2274||fbP-2||FKBP-type peptidyl-prolyl cis-trans isomerase (NCBI)||15, 278|
|GSU2295||GSU2295||hypothetical protein (VIMSS)||141, 278|
|GSU2385||GSU2385||hypothetical protein (VIMSS)||82, 278|
|GSU2400||GSU2400||conserved hypothetical protein (VIMSS)||104, 226|
|GSU2402||GSU2402||hypothetical protein (VIMSS)||84, 278|
|GSU2533||GSU2533||hypothetical protein (VIMSS)||224, 278|
|GSU2573||GSU2573||hypothetical protein (VIMSS)||104, 296|
|GSU2782||GSU2782||AcrB/AcrD/AcrF family protein (VIMSS)||278, 296|
|GSU3031||GSU3031||sigma-54 dependent transcriptional regulator (VIMSS)||69, 278|
|GSU3118||regX3||DNA-binding response regulator (NCBI)||253, 278|
|GSU3119||GSU3119||sensor histidine kinase (VIMSS)||180, 278|
|GSU3192||GSU3192||heat shock protein, Hsp20 family (NCBI)||104, 326|
|GSU3193||loN-3||ATP-dependent protease La (NCBI)||104, 246|
|GSU3195||GSU3195||chemotaxis protein methyltransferase CheR,putative (VIMSS)||104, 326|
|GSU3201||GSU3201||chemotaxis protein CheD, putative (VIMSS)||104, 326|
|GSU3203||GSU3203||outer membrane lipoprotein carrier protein LolA, putative (NCBI)||104, 183|
|GSU3390||GSU3390||membrane protein, putative (VIMSS)||104, 226|
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If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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