Organism : Methanococcus maripaludis S2 | Module List :
Regulation information for MMP0062(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 10 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Functional Enrichment for MMP0062
Module neighborhood information for MMP0062
|Gene||Common Name||Description||Module membership|
|MMP0003||korA||2-oxoglutarate ferredoxin oxidoreductase subunit alpha||27, 77|
|MMP0006||3-dehydroquinate synthase||27, 77|
|MMP0043||isopentenyl pyrophosphate isomerase||61, 92|
|MMP0045||idsA||bifunctional short chain isoprenyl diphosphate synthase||20, 61|
|MMP0060||rplX||50S ribosomal protein LX||61, 96, 138|
|MMP0061||aIF6||translation initiation factor IF-6||8, 61, 96, 138|
|MMP0062||50S ribosomal protein L31e||61, 77, 96, 128, 138|
|MMP0075||abortive infection protein||96, 136|
|MMP0103||pyridoxal biosynthesis lyase PdxS||8, 27, 77|
|MMP0127||hmd||H(2)-dependent methylenetetrahydromethanopterin dehydrogenase||8, 77|
|MMP0135||thrC||threonine synthase||27, 77|
|MMP0136||leuD||3-isopropylmalate dehydratase small subunit||27, 77|
|MMP0150||hypothetical protein MMP0150||11, 138|
|MMP0151||rpl40e||50S ribosomal protein L40e||11, 138|
|MMP0155||hypothetical protein MMP0155||61, 87|
|MMP0163||arsA||arsenite-activated ATPase ArsA||16, 96|
|MMP0242||hypothetical protein MMP0242||8, 39, 96|
|MMP0245||pfdB||prefoldin subunit beta||96, 138|
|MMP0249||rpl37ae||50S ribosomal protein L37Ae||61, 77|
|MMP0250||putative RNA-associated protein||61, 77|
|MMP0261||DNA directed RNA polymerase subunit L||27, 77|
|MMP0298||rpl15||50S ribosomal protein L15e||18, 128|
|MMP0317||hypothetical protein MMP0317||77, 96|
|MMP0350||hexapeptide repeat-containing transferase||80, 96|
|MMP0370||hypothetical protein MMP0370||77, 96|
|MMP0384||hypothetical protein MMP0384||61, 87|
|MMP0391||aspC||aspartate aminotransferase||77, 78|
|MMP0396||eno||phosphopyruvate hydratase||77, 78|
|MMP0440||DNA-directed RNA polymerase subunit E'||51, 61|
|MMP0441||rpoE2||DNA-directed RNA polymerase subunit E||51, 61|
|MMP0442||hypothetical protein MMP0442||3, 51, 61|
|MMP0443||rps24e||30S ribosomal protein S24e||3, 51, 96, 97|
|MMP0457||DEAD/DEAH box helicase domain-containing protein||61, 92|
|MMP0553||argF||ornithine carbamoyltransferase||27, 77|
|MMP0572||slyD||FKBP-type peptidylprolyl isomerase||11, 96|
|MMP0574||hypothetical protein MMP0574||11, 138|
|MMP0575||gatC||aspartyl/glutamyl-tRNA amidotransferase subunit C||11, 138|
|MMP0576||dapA||dihydrodipicolinate synthase||11, 18, 138|
|MMP0577||rps17E||30S ribosomal protein S17e||11, 18, 138|
|MMP0578||aroQ||chorismate mutase||11, 18, 96, 138|
|MMP0654||ilvC||ketol-acid reductoisomerase||27, 77|
|MMP0657||hypothetical protein MMP0657||8, 29, 96|
|MMP0668||hypothetical protein MMP0668||3, 96, 105|
|MMP0946||gatB||aspartyl/glutamyl-tRNA amidotransferase subunit B||8, 81, 96|
|MMP1013||carB||carbamoyl-phosphate synthase large subunit||77, 96|
|MMP1035||hypothetical protein MMP1035||77, 136|
|MMP1036||hypothetical protein MMP1036||77, 136|
|MMP1113||transketoloase, C terminal half||96, 120|
|MMP1147||rpl37e||50S ribosomal protein L37e||18, 96, 138|
|MMP1149||leuC||3-isopropylmalate dehydratase large subunit||27, 77|
|MMP1207||30S ribosomal protein S6e||105, 128|
|MMP1208||aIF2_gamma||translation initiation factor IF-2 subunit gamma||20, 61, 96|
|MMP1254||purM||phosphoribosylaminoimidazole synthetase||96, 120|
|MMP1260||hypothetical protein MMP1260||40, 96|
|MMP1310||purO||IMP cyclohydrolase||27, 77|
|MMP1399||aspartate/glutamate/uridylate kinase||51, 61|
|MMP1400||hypothetical protein MMP1400||61, 92, 97, 105|
|MMP1401||ef1B||elongation factor 1-beta||61, 96, 97, 105|
|MMP1403||rpl22p||50S ribosomal protein L22P||3, 61, 92, 96, 97, 105|
|MMP1433||rpl11p||50S ribosomal protein L11P||96, 97, 105|
|MMP1434||nusG||transcription antitermination protein NusG||29, 61|
|MMP1443||ATP/GTP-binding motif-containing protein||20, 61, 92|
|MMP1444||methionine aminopeptidase||20, 51, 61, 92|
|MMP1445||guaA||GMP synthase subunit A||20, 61|
|MMP1472||hypothetical protein MMP1472||11, 61|
|MMP1497||hypothetical protein MMP1497||27, 77|
|MMP1498||hypothetical protein MMP1498||27, 77|
|MMP1510||gatA||aspartyl/glutamyl-tRNA amidotransferase subunit A||27, 77|
|MMP1515||hsp60||chaperonin GroEL||77, 96|
|MMP1543||rpl3p||50S ribosomal protein L3P||63, 92, 128|
|MMP1544||rpl4lp||50S ribosomal protein L4P||56, 63, 128|
|MMP1545||rplW||50S ribosomal protein L23P||56, 63, 128|
|MMP1546||rpl2p||50S ribosomal protein L2P||56, 128|
|MMP1547||rps19p||30S ribosomal protein S19P||56, 128|
|MMP1579||rps15p||30S ribosomal protein S15P||61, 138|
|MMP1588||serA||D-3-phosphoglycerate dehydrogenase||7, 8, 27, 77|
|MMP1593||hypothetical protein MMP1593||27, 77|
|MMP1646||hypothetical protein MMP1646||96, 136|
|MMP1699||hypothetical protein MMP1699||77, 136|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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Identity of gene members in a module may help to identify potential interactions between different functional modules. Therefore, neighbor genes that share the same module(s) with gene under consideration are shown here. For each memebr, gene name, description and modules that contain it are listed.
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CircVisOur circular module explorer is adapted from visquick originally developed by Dick Kreisberg of Ilya Shmulevich lab at ISB for The Cancer Genome Atlas. We use simplified version of visquick to display distribution of module members and their interactions across the genome. This view provides summary of regulation information for a gene. The main components are;
- 1. All genomic elements for the organism are represented as a circle and each element is separated by black tick marks. In this example chromosome and pDV represent main chromosome and plasmid for D. vulgaris Hildenborough, respectively.
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