Organism : Methanococcus maripaludis S2 | Module List :
Regulation information for MMP1444(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 8 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Functional Enrichment for MMP1444
Module neighborhood information for MMP1444
|Gene||Common Name||Description||Module membership|
|MMP0026||DP2||DNA polymerase II large subunit||25, 41, 92|
|MMP0036||tfe||transcription initiation factor E subunit alpha||49, 87, 92, 129|
|MMP0043||isopentenyl pyrophosphate isomerase||61, 92|
|MMP0044||beta-lactamase domain-containing protein||11, 20|
|MMP0045||idsA||bifunctional short chain isoprenyl diphosphate synthase||20, 61|
|MMP0046||hypothetical protein MMP0046||20, 51, 140|
|MMP0060||rplX||50S ribosomal protein LX||61, 96, 138|
|MMP0061||aIF6||translation initiation factor IF-6||8, 61, 96, 138|
|MMP0062||50S ribosomal protein L31e||61, 77, 96, 128, 138|
|MMP0074||hypothetical protein MMP0074||51, 140|
|MMP0091||hypothetical protein MMP0091||51, 106|
|MMP0093||50S ribosomal protein L21e||8, 11, 20|
|MMP0099||major facilitator transporter||14, 92|
|MMP0116||argC||N-acetyl-gamma-glutamyl-phosphate reductase||8, 51|
|MMP0134||hypothetical protein MMP0134||24, 92|
|MMP0141||hypothetical protein MMP0141||41, 51|
|MMP0142||thiamine pyrophosphate dependent protein||17, 41, 51|
|MMP0155||hypothetical protein MMP0155||61, 87|
|MMP0249||rpl37ae||50S ribosomal protein L37Ae||61, 77|
|MMP0250||putative RNA-associated protein||61, 77|
|MMP0268||truA||tRNA pseudouridine synthase A||49, 51|
|MMP0286||hypothetical protein MMP0286||29, 51|
|MMP0384||hypothetical protein MMP0384||61, 87|
|MMP0405||gch3||GTP cyclohydrolase III||19, 92|
|MMP0440||DNA-directed RNA polymerase subunit E'||51, 61|
|MMP0441||rpoE2||DNA-directed RNA polymerase subunit E||51, 61|
|MMP0442||hypothetical protein MMP0442||3, 51, 61|
|MMP0443||rps24e||30S ribosomal protein S24e||3, 51, 96, 97|
|MMP0444||30S ribosomal protein S27ae||3, 51, 97|
|MMP0457||DEAD/DEAH box helicase domain-containing protein||61, 92|
|MMP0530||hypothetical protein MMP0530||92, 140|
|MMP0566||AMP-binding domain-containing protein||92, 109|
|MMP0596||C/D box methylation guide ribonucleoprotein complex aNOP56 subunit||20, 81|
|MMP0639||50S ribosomal protein L24e||16, 92, 130|
|MMP0640||rps28e||30S ribosomal protein S28e||16, 92, 130|
|MMP0641||rpl7ae||50S ribosomal protein L7Ae||16, 92, 130|
|MMP0670||hypothetical protein MMP0670||41, 51|
|MMP0671||ywbE||hypothetical protein MMP0671||51, 87|
|MMP0682||hypothetical protein MMP0682||67, 92|
|MMP0694||beta-lactamase-like protein||51, 109, 149|
|MMP0695||psmB||proteasome subunit beta||51, 92|
|MMP0760||hypothetical protein MMP0760||22, 67, 92|
|MMP0884||hypothetical protein MMP0884||39, 51|
|MMP0901||ATP/GTP-binding motif-containing protein||20, 51|
|MMP0943||taqD||glycerol-3-phosphate cytidyltransferase||92, 111|
|MMP0975||modA||molybdenum ABC transporter solute-binding protein||64, 92|
|MMP1064||adenylate cyclase||4, 51|
|MMP1131||peptide chain release factor 1||20, 81|
|MMP1208||aIF2_gamma||translation initiation factor IF-2 subunit gamma||20, 61, 96|
|MMP1211||hypothetical protein MMP1211||89, 92|
|MMP1289||rpl10e||50S ribosomal protein L10e||3, 92, 105|
|MMP1318||lysS||lysyl-tRNA synthetase||20, 21|
|MMP1319||rps13p||30S ribosomal protein S13P||92, 103, 118|
|MMP1361||rpoB2||DNA-directed RNA polymerase subunit beta''||25, 92, 109, 149|
|MMP1379||thyA||thymidylate synthase||64, 92|
|MMP1381||beta-lactamase-like protein||51, 92|
|MMP1399||aspartate/glutamate/uridylate kinase||51, 61|
|MMP1400||hypothetical protein MMP1400||61, 92, 97, 105|
|MMP1401||ef1B||elongation factor 1-beta||61, 96, 97, 105|
|MMP1403||rpl22p||50S ribosomal protein L22P||3, 61, 92, 96, 97, 105|
|MMP1431||2pgk||2-phosphoglycerate kinase||49, 51|
|MMP1432||purA||adenylosuccinate synthetase||29, 51, 130|
|MMP1434||nusG||transcription antitermination protein NusG||29, 61|
|MMP1443||ATP/GTP-binding motif-containing protein||20, 61, 92|
|MMP1444||methionine aminopeptidase||20, 51, 61, 92|
|MMP1445||guaA||GMP synthase subunit A||20, 61|
|MMP1472||hypothetical protein MMP1472||11, 61|
|MMP1473||hypothetical protein MMP1473||11, 20|
|MMP1474||ileS||isoleucyl-tRNA synthetase||16, 20|
|MMP1480||aconitase family||60, 87, 92|
|MMP1509||hypothetical protein MMP1509||11, 20|
|MMP1511||amino acid carrier protein||19, 92|
|MMP1543||rpl3p||50S ribosomal protein L3P||63, 92, 128|
|MMP1579||rps15p||30S ribosomal protein S15P||61, 138|
|MMP1590||ExsB family protein||24, 51|
|MMP1594||hypothetical protein MMP1594||51, 143|
|MMP1705||creatininase||8, 11, 20|
|MMP1706||H/ACA RNA-protein complex component Nop10p||20, 21|
|MMP1707||aIF2_alpha||translation initiation factor IF-2 subunit alpha||20, 21|
|MMP1708||rps27e||30S ribosomal protein S27e||11, 20|
|MMP1709||rpl44e||50S ribosomal protein L44e||11, 20|
|MMP1710||hypothetical protein MMP1710||20, 87, 92|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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Identity of gene members in a module may help to identify potential interactions between different functional modules. Therefore, neighbor genes that share the same module(s) with gene under consideration are shown here. For each memebr, gene name, description and modules that contain it are listed.
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CircVisOur circular module explorer is adapted from visquick originally developed by Dick Kreisberg of Ilya Shmulevich lab at ISB for The Cancer Genome Atlas. We use simplified version of visquick to display distribution of module members and their interactions across the genome. This view provides summary of regulation information for a gene. The main components are;
- 1. All genomic elements for the organism are represented as a circle and each element is separated by black tick marks. In this example chromosome and pDV represent main chromosome and plasmid for D. vulgaris Hildenborough, respectively.
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