Organism : Methanococcus maripaludis S2 | Module List :
Regulation information for MMP0629(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for MMP0629
|Gene||Common Name||Description||Module membership|
|MMP0025||hypothetical protein MMP0025||8, 52|
|MMP0059||hypothetical protein MMP0059||8, 58, 64|
|MMP0061||aIF6||translation initiation factor IF-6||8, 61, 96, 138|
|MMP0087||hmgA||hydroxymethylglutaryl-coenzyme A reductase:3-hydroxy-3-methylglutaryl coenzyme A reductase||39, 136|
|MMP0088||hemA||glutamyl-tRNA reductase||39, 136|
|MMP0093||50S ribosomal protein L21e||8, 11, 20|
|MMP0094||putative pseudouridylate synthase||8, 11|
|MMP0096||putative GntR family transcriptional regulator||39, 58|
|MMP0103||pyridoxal biosynthesis lyase PdxS||8, 27, 77|
|MMP0116||argC||N-acetyl-gamma-glutamyl-phosphate reductase||8, 51|
|MMP0127||hmd||H(2)-dependent methylenetetrahydromethanopterin dehydrogenase||8, 77|
|MMP0164||cbiX(s)||sirohydrochlorin cobaltochelatase||39, 136|
|MMP0183||ribB||3,4-dihydroxy-2-butanone 4-phosphate synthase||8, 70|
|MMP0242||hypothetical protein MMP0242||8, 39, 96|
|MMP0290||nac||nascent polypeptide-associated complex protein||8, 78|
|MMP0309||DsrE family protein||8, 78|
|MMP0371||hypothetical protein MMP0371||8, 70|
|MMP0382||putative ATPase RIL||8, 70, 78|
|MMP0388||geranylgeranyl reductase||39, 68|
|MMP0407||hypothetical protein MMP0407||8, 19, 89|
|MMP0414||thrS||threonyl-tRNA synthetase||8, 81, 112|
|MMP0539||leuB||multifunctional 3-isopropylmalate dehydrogenase/D-malate dehydrogenase||7, 8|
|MMP0540||purC||phosphoribosylaminoimidazole-succinocarboxamide synthase||8, 112, 143|
|MMP0597||flpA||fibrillarin||8, 16, 81|
|MMP0629||hypothetical protein MMP0629||8, 39|
|MMP0644||cation diffusion facilitator family transporter||39, 136|
|MMP0645||mdh||malate dehydrogenase||8, 39, 136|
|MMP0646||hypothetical protein MMP0646||39, 136|
|MMP0650||ilvB||acetolactate synthase catalytic subunit||8, 39|
|MMP0651||ilvH||acetolactate synthase 3 regulatory subunit||8, 39|
|MMP0657||hypothetical protein MMP0657||8, 29, 96|
|MMP0687||tpiA||triosephosphate isomerase||8, 13|
|MMP0697||leuS||leucyl-tRNA synthetase||8, 143|
|MMP0704||ParA type ATPase||8, 78, 112|
|MMP0736||PRC-barrel domain-containing protein||8, 19, 38|
|MMP0737||L-aspartate dehydrogenase||8, 38|
|MMP0816||seryl-tRNA synthetase-like protein||8, 70|
|MMP0874||SAM-binding motif-containing protein||39, 136|
|MMP0875||slpB||S layer protein||39, 136|
|MMP0884||hypothetical protein MMP0884||39, 51|
|MMP0888||cobalt transport protein CbiN||39, 136|
|MMP0889||cobalt transport protein CbiM||39, 136|
|MMP0898||cellulose-binding protein||8, 70|
|MMP0946||gatB||aspartyl/glutamyl-tRNA amidotransferase subunit B||8, 81, 96|
|MMP0965||formylmethanofuran dehydrogenase subunit E-like protein||8, 39, 136|
|MMP0971||purB||adenylosuccinate lyase||8, 11|
|MMP1021||hypothetical protein MMP1021||8, 21|
|MMP1023||TetR family transcriptional regulator||8, 21, 78|
|MMP1070||hypothetical protein MMP1070||8, 15|
|MMP1176||putative iron transport system substrate-binding protein, N-term half||39, 136|
|MMP1177||putative iron transport system substrate-binding protein, C-term half||39, 136|
|MMP1178||periplasmic binding protein||39, 136|
|MMP1181||iron transport system binding protein||39, 136|
|MMP1182||transport system permease||39, 136|
|MMP1183||iron ABC transporter ATPase subunit||39, 136|
|MMP1213||hypothetical protein MMP1213||8, 89|
|MMP1308||tal||putative translaldolase||8, 16, 112|
|MMP1321||rps11p||30S ribosomal protein S11P||8, 105, 118|
|MMP1352||ribulose-1,5-biphosphate synthetase||7, 8, 78|
|MMP1437||top6A||DNA topoisomerase VI subunit A||39, 112|
|MMP1512||alr||alanine racemase||8, 21|
|MMP1513||ald||alanine dehydrogenase||8, 21|
|MMP1527||aspartate aminotransferase||8, 21|
|MMP1531||hypothetical protein MMP1531||8, 66|
|MMP1588||serA||D-3-phosphoglycerate dehydrogenase||7, 8, 27, 77|
|MMP1656||glutamine amidotransferase subunit PdxT||8, 137|
|MMP1698||hypothetical protein MMP1698||4, 8|
|MMP1700||SSS sodium solute transporter superfamily||39, 41|
|MMP1705||creatininase||8, 11, 20|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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