Organism : Methanococcus maripaludis S2 | Module List :
hypothetical protein MMP1021
Functional Annotations (1)
|S-layer domain||cog/ cog|
Regulation information for MMP1021(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Functional Enrichment for MMP1021
|S-layer domain||cog/ cog|
Module neighborhood information for MMP1021
|Gene||Common Name||Description||Module membership|
|MMP0025||hypothetical protein MMP0025||8, 52|
|MMP0059||hypothetical protein MMP0059||8, 58, 64|
|MMP0061||aIF6||translation initiation factor IF-6||8, 61, 96, 138|
|MMP0093||50S ribosomal protein L21e||8, 11, 20|
|MMP0094||putative pseudouridylate synthase||8, 11|
|MMP0103||pyridoxal biosynthesis lyase PdxS||8, 27, 77|
|MMP0116||argC||N-acetyl-gamma-glutamyl-phosphate reductase||8, 51|
|MMP0127||hmd||H(2)-dependent methylenetetrahydromethanopterin dehydrogenase||8, 77|
|MMP0183||ribB||3,4-dihydroxy-2-butanone 4-phosphate synthase||8, 70|
|MMP0228||trm1||N(2),N(2)-dimethylguanosine tRNA methyltransferase||21, 42|
|MMP0242||hypothetical protein MMP0242||8, 39, 96|
|MMP0270||Fe-S cluster domain-containing protein||21, 70|
|MMP0271||putative ATP binding nickel incorporation protein||21, 95|
|MMP0272||ABC transporter ATPase||21, 70|
|MMP0273||comA||phosphosulfolactate synthase||21, 70|
|MMP0290||nac||nascent polypeptide-associated complex protein||8, 78|
|MMP0309||DsrE family protein||8, 78|
|MMP0371||hypothetical protein MMP0371||8, 70|
|MMP0382||putative ATPase RIL||8, 70, 78|
|MMP0407||hypothetical protein MMP0407||8, 19, 89|
|MMP0414||thrS||threonyl-tRNA synthetase||8, 81, 112|
|MMP0539||leuB||multifunctional 3-isopropylmalate dehydrogenase/D-malate dehydrogenase||7, 8|
|MMP0540||purC||phosphoribosylaminoimidazole-succinocarboxamide synthase||8, 112, 143|
|MMP0597||flpA||fibrillarin||8, 16, 81|
|MMP0618||hypothetical protein MMP0618||21, 70|
|MMP0619||hypothetical protein MMP0619||21, 70|
|MMP0620||atwA||methyl coenzyme M reductase, component A2||21, 70|
|MMP0629||hypothetical protein MMP0629||8, 39|
|MMP0645||mdh||malate dehydrogenase||8, 39, 136|
|MMP0650||ilvB||acetolactate synthase catalytic subunit||8, 39|
|MMP0651||ilvH||acetolactate synthase 3 regulatory subunit||8, 39|
|MMP0657||hypothetical protein MMP0657||8, 29, 96|
|MMP0687||tpiA||triosephosphate isomerase||8, 13|
|MMP0697||leuS||leucyl-tRNA synthetase||8, 143|
|MMP0698||hypothetical protein MMP0698||21, 143|
|MMP0704||ParA type ATPase||8, 78, 112|
|MMP0736||PRC-barrel domain-containing protein||8, 19, 38|
|MMP0737||L-aspartate dehydrogenase||8, 38|
|MMP0816||seryl-tRNA synthetase-like protein||8, 70|
|MMP0898||cellulose-binding protein||8, 70|
|MMP0904||selD||selenophosphate synthetase||21, 70|
|MMP0946||gatB||aspartyl/glutamyl-tRNA amidotransferase subunit B||8, 81, 96|
|MMP0954||hypothetical protein MMP0954||21, 70|
|MMP0965||formylmethanofuran dehydrogenase subunit E-like protein||8, 39, 136|
|MMP0971||purB||adenylosuccinate lyase||8, 11|
|MMP1021||hypothetical protein MMP1021||8, 21|
|MMP1022||hypothetical protein MMP1022||21, 70|
|MMP1023||TetR family transcriptional regulator||8, 21, 78|
|MMP1026||argS||arginyl-tRNA synthetase||12, 21|
|MMP1070||hypothetical protein MMP1070||8, 15|
|MMP1186||lon||thiol (cysteine) protease||21, 115|
|MMP1200||lysA||diaminopimelate decarboxylase||21, 41|
|MMP1213||hypothetical protein MMP1213||8, 89|
|MMP1259||FAD-dependent pyridine nucleotide-disulfide oxidoreductase||12, 21|
|MMP1308||tal||putative translaldolase||8, 16, 112|
|MMP1317||hypothetical protein MMP1317||21, 115|
|MMP1318||lysS||lysyl-tRNA synthetase||20, 21|
|MMP1321||rps11p||30S ribosomal protein S11P||8, 105, 118|
|MMP1352||ribulose-1,5-biphosphate synthetase||7, 8, 78|
|MMP1512||alr||alanine racemase||8, 21|
|MMP1513||ald||alanine dehydrogenase||8, 21|
|MMP1527||aspartate aminotransferase||8, 21|
|MMP1531||hypothetical protein MMP1531||8, 66|
|MMP1583||S-adenosylmethionine decarboxylase-like protein||21, 112|
|MMP1584||spermidine synthase||11, 21|
|MMP1588||serA||D-3-phosphoglycerate dehydrogenase||7, 8, 27, 77|
|MMP1611||hypothetical protein MMP1611||21, 106|
|MMP1656||glutamine amidotransferase subunit PdxT||8, 137|
|MMP1657||hypothetical protein MMP1657||21, 28|
|MMP1681||hypothetical protein MMP1681||21, 143|
|MMP1682||recJ||single stranded DNA-specific exonuclease||21, 106|
|MMP1698||hypothetical protein MMP1698||4, 8|
|MMP1704||hypothetical protein MMP1704||21, 115|
|MMP1705||creatininase||8, 11, 20|
|MMP1706||H/ACA RNA-protein complex component Nop10p||20, 21|
|MMP1707||aIF2_alpha||translation initiation factor IF-2 subunit alpha||20, 21|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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Identity of gene members in a module may help to identify potential interactions between different functional modules. Therefore, neighbor genes that share the same module(s) with gene under consideration are shown here. For each memebr, gene name, description and modules that contain it are listed.
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CircVisOur circular module explorer is adapted from visquick originally developed by Dick Kreisberg of Ilya Shmulevich lab at ISB for The Cancer Genome Atlas. We use simplified version of visquick to display distribution of module members and their interactions across the genome. This view provides summary of regulation information for a gene. The main components are;
- 1. All genomic elements for the organism are represented as a circle and each element is separated by black tick marks. In this example chromosome and pDV represent main chromosome and plasmid for D. vulgaris Hildenborough, respectively.
- 2. Source gene
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