Organism : Methanococcus maripaludis S2 | Module List :
Regulation information for MMP1531(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Functional Enrichment for MMP1531
Module neighborhood information for MMP1531
|Gene||Common Name||Description||Module membership|
|MMP0014||truD||tRNA pseudouridine synthase D||66, 107|
|MMP0015||hypothetical protein MMP0015||66, 107|
|MMP0022||hypothetical protein MMP0022||13, 66|
|MMP0023||hypothetical protein MMP0023||13, 66|
|MMP0025||hypothetical protein MMP0025||8, 52|
|MMP0059||hypothetical protein MMP0059||8, 58, 64|
|MMP0061||aIF6||translation initiation factor IF-6||8, 61, 96, 138|
|MMP0093||50S ribosomal protein L21e||8, 11, 20|
|MMP0094||putative pseudouridylate synthase||8, 11|
|MMP0103||pyridoxal biosynthesis lyase PdxS||8, 27, 77|
|MMP0116||argC||N-acetyl-gamma-glutamyl-phosphate reductase||8, 51|
|MMP0127||hmd||H(2)-dependent methylenetetrahydromethanopterin dehydrogenase||8, 77|
|MMP0179||purL||phosphoribosylformylglycinamidine synthase||66, 143|
|MMP0183||ribB||3,4-dihydroxy-2-butanone 4-phosphate synthase||8, 70|
|MMP0242||hypothetical protein MMP0242||8, 39, 96|
|MMP0290||nac||nascent polypeptide-associated complex protein||8, 78|
|MMP0309||DsrE family protein||8, 78|
|MMP0371||hypothetical protein MMP0371||8, 70|
|MMP0382||putative ATPase RIL||8, 70, 78|
|MMP0407||hypothetical protein MMP0407||8, 19, 89|
|MMP0414||thrS||threonyl-tRNA synthetase||8, 81, 112|
|MMP0539||leuB||multifunctional 3-isopropylmalate dehydrogenase/D-malate dehydrogenase||7, 8|
|MMP0540||purC||phosphoribosylaminoimidazole-succinocarboxamide synthase||8, 112, 143|
|MMP0597||flpA||fibrillarin||8, 16, 81|
|MMP0609||pth2||peptidyl-tRNA hydrolase||66, 140|
|MMP0629||hypothetical protein MMP0629||8, 39|
|MMP0645||mdh||malate dehydrogenase||8, 39, 136|
|MMP0650||ilvB||acetolactate synthase catalytic subunit||8, 39|
|MMP0651||ilvH||acetolactate synthase 3 regulatory subunit||8, 39|
|MMP0657||hypothetical protein MMP0657||8, 29, 96|
|MMP0687||tpiA||triosephosphate isomerase||8, 13|
|MMP0697||leuS||leucyl-tRNA synthetase||8, 143|
|MMP0704||ParA type ATPase||8, 78, 112|
|MMP0736||PRC-barrel domain-containing protein||8, 19, 38|
|MMP0737||L-aspartate dehydrogenase||8, 38|
|MMP0816||seryl-tRNA synthetase-like protein||8, 70|
|MMP0844||hypothetical protein MMP0844||66, 133|
|MMP0868||proV||ABC transporter ATPase||41, 66|
|MMP0898||cellulose-binding protein||8, 70|
|MMP0936||aroE||shikimate 5-dehydrogenase||66, 107|
|MMP0945||glyceraldehyde-3-phosphate ferredoxin oxidoreductase||66, 98|
|MMP0946||gatB||aspartyl/glutamyl-tRNA amidotransferase subunit B||8, 81, 96|
|MMP0965||formylmethanofuran dehydrogenase subunit E-like protein||8, 39, 136|
|MMP0971||purB||adenylosuccinate lyase||8, 11|
|MMP1021||hypothetical protein MMP1021||8, 21|
|MMP1023||TetR family transcriptional regulator||8, 21, 78|
|MMP1034||tmk||thymidylate kinase||66, 68|
|MMP1070||hypothetical protein MMP1070||8, 15|
|MMP1082||hisH||imidazole glycerol phosphate synthase subunit HisH||66, 143|
|MMP1090||NAD-dependent epimerase/dehydratase||66, 133|
|MMP1095||phosphate-binding protein||66, 89|
|MMP1096||phosphate ABC transporter inner membrane protein||66, 89|
|MMP1097||phosphate ABC transporter inner membrane protein||66, 89|
|MMP1098||pstB||phosphate ABC transporter ATP-binding protein||66, 89|
|MMP1099||phosphate transporter PhoU||66, 89, 95|
|MMP1171||pssA||CDP-diacylglycerol--serine O-phosphatidyltransferase||28, 66|
|MMP1213||hypothetical protein MMP1213||8, 89|
|MMP1303||sensory transduction histidine kinase||4, 28, 66|
|MMP1308||tal||putative translaldolase||8, 16, 112|
|MMP1321||rps11p||30S ribosomal protein S11P||8, 105, 118|
|MMP1352||ribulose-1,5-biphosphate synthetase||7, 8, 78|
|MMP1454||ehaG||hypothetical protein MMP1454||66, 117, 133|
|MMP1455||ehaH||putative transmembrane subunit of a hydrogenase||66, 133|
|MMP1456||ehaI||hypothetical protein MMP1456||66, 117, 133|
|MMP1457||ehaJ||energy conserving hydrogenase A integral membrane subunit||66, 133|
|MMP1458||ehaK||hypothetical protein MMP1458||66, 133|
|MMP1459||ehaL||hypothetical protein MMP1459||66, 117, 133|
|MMP1460||ehaM||hypothetical protein MMP1460||66, 133|
|MMP1462||ehaO||energy conserving hydrogenase A large subunit||66, 133|
|MMP1512||alr||alanine racemase||8, 21|
|MMP1513||ald||alanine dehydrogenase||8, 21|
|MMP1527||aspartate aminotransferase||8, 21|
|MMP1531||hypothetical protein MMP1531||8, 66|
|MMP1588||serA||D-3-phosphoglycerate dehydrogenase||7, 8, 27, 77|
|MMP1656||glutamine amidotransferase subunit PdxT||8, 137|
|MMP1662||cbiF||precorrin-4 C11-methyltransferase||66, 117|
|MMP1665||HEAT domain-containing protein||66, 117|
|MMP1698||hypothetical protein MMP1698||4, 8|
|MMP1705||creatininase||8, 11, 20|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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Identity of gene members in a module may help to identify potential interactions between different functional modules. Therefore, neighbor genes that share the same module(s) with gene under consideration are shown here. For each memebr, gene name, description and modules that contain it are listed.
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CircVisOur circular module explorer is adapted from visquick originally developed by Dick Kreisberg of Ilya Shmulevich lab at ISB for The Cancer Genome Atlas. We use simplified version of visquick to display distribution of module members and their interactions across the genome. This view provides summary of regulation information for a gene. The main components are;
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