Organism : Methanococcus maripaludis S2 | Module List :
Regulation information for MMP0093(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 6 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Functional Enrichment for MMP0093
Module neighborhood information for MMP0093
|Gene||Common Name||Description||Module membership|
|MMP0025||hypothetical protein MMP0025||8, 52|
|MMP0044||beta-lactamase domain-containing protein||11, 20|
|MMP0045||idsA||bifunctional short chain isoprenyl diphosphate synthase||20, 61|
|MMP0046||hypothetical protein MMP0046||20, 51, 140|
|MMP0059||hypothetical protein MMP0059||8, 58, 64|
|MMP0061||aIF6||translation initiation factor IF-6||8, 61, 96, 138|
|MMP0093||50S ribosomal protein L21e||8, 11, 20|
|MMP0094||putative pseudouridylate synthase||8, 11|
|MMP0103||pyridoxal biosynthesis lyase PdxS||8, 27, 77|
|MMP0116||argC||N-acetyl-gamma-glutamyl-phosphate reductase||8, 51|
|MMP0127||hmd||H(2)-dependent methylenetetrahydromethanopterin dehydrogenase||8, 77|
|MMP0150||hypothetical protein MMP0150||11, 138|
|MMP0151||rpl40e||50S ribosomal protein L40e||11, 138|
|MMP0159||rpl39e||50S ribosomal protein L39e||11, 18, 105|
|MMP0183||ribB||3,4-dihydroxy-2-butanone 4-phosphate synthase||8, 70|
|MMP0242||hypothetical protein MMP0242||8, 39, 96|
|MMP0258||rpl12p||50S ribosomal protein L12P||11, 103|
|MMP0259||rplP0||acidic ribosomal protein P0||11, 18, 56|
|MMP0290||nac||nascent polypeptide-associated complex protein||8, 78|
|MMP0309||DsrE family protein||8, 78|
|MMP0371||hypothetical protein MMP0371||8, 70|
|MMP0382||putative ATPase RIL||8, 70, 78|
|MMP0407||hypothetical protein MMP0407||8, 19, 89|
|MMP0414||thrS||threonyl-tRNA synthetase||8, 81, 112|
|MMP0539||leuB||multifunctional 3-isopropylmalate dehydrogenase/D-malate dehydrogenase||7, 8|
|MMP0540||purC||phosphoribosylaminoimidazole-succinocarboxamide synthase||8, 112, 143|
|MMP0572||slyD||FKBP-type peptidylprolyl isomerase||11, 96|
|MMP0574||hypothetical protein MMP0574||11, 138|
|MMP0575||gatC||aspartyl/glutamyl-tRNA amidotransferase subunit C||11, 138|
|MMP0576||dapA||dihydrodipicolinate synthase||11, 18, 138|
|MMP0577||rps17E||30S ribosomal protein S17e||11, 18, 138|
|MMP0578||aroQ||chorismate mutase||11, 18, 96, 138|
|MMP0596||C/D box methylation guide ribonucleoprotein complex aNOP56 subunit||20, 81|
|MMP0597||flpA||fibrillarin||8, 16, 81|
|MMP0625||50S ribosomal protein L14e||11, 18, 105|
|MMP0629||hypothetical protein MMP0629||8, 39|
|MMP0645||mdh||malate dehydrogenase||8, 39, 136|
|MMP0650||ilvB||acetolactate synthase catalytic subunit||8, 39|
|MMP0651||ilvH||acetolactate synthase 3 regulatory subunit||8, 39|
|MMP0657||hypothetical protein MMP0657||8, 29, 96|
|MMP0687||tpiA||triosephosphate isomerase||8, 13|
|MMP0697||leuS||leucyl-tRNA synthetase||8, 143|
|MMP0704||ParA type ATPase||8, 78, 112|
|MMP0736||PRC-barrel domain-containing protein||8, 19, 38|
|MMP0737||L-aspartate dehydrogenase||8, 38|
|MMP0816||seryl-tRNA synthetase-like protein||8, 70|
|MMP0898||cellulose-binding protein||8, 70|
|MMP0901||ATP/GTP-binding motif-containing protein||20, 51|
|MMP0946||gatB||aspartyl/glutamyl-tRNA amidotransferase subunit B||8, 81, 96|
|MMP0965||formylmethanofuran dehydrogenase subunit E-like protein||8, 39, 136|
|MMP0971||purB||adenylosuccinate lyase||8, 11|
|MMP1021||hypothetical protein MMP1021||8, 21|
|MMP1023||TetR family transcriptional regulator||8, 21, 78|
|MMP1070||hypothetical protein MMP1070||8, 15|
|MMP1131||peptide chain release factor 1||20, 81|
|MMP1208||aIF2_gamma||translation initiation factor IF-2 subunit gamma||20, 61, 96|
|MMP1213||hypothetical protein MMP1213||8, 89|
|MMP1308||tal||putative translaldolase||8, 16, 112|
|MMP1318||lysS||lysyl-tRNA synthetase||20, 21|
|MMP1321||rps11p||30S ribosomal protein S11P||8, 105, 118|
|MMP1352||ribulose-1,5-biphosphate synthetase||7, 8, 78|
|MMP1443||ATP/GTP-binding motif-containing protein||20, 61, 92|
|MMP1444||methionine aminopeptidase||20, 51, 61, 92|
|MMP1445||guaA||GMP synthase subunit A||20, 61|
|MMP1472||hypothetical protein MMP1472||11, 61|
|MMP1473||hypothetical protein MMP1473||11, 20|
|MMP1474||ileS||isoleucyl-tRNA synthetase||16, 20|
|MMP1509||hypothetical protein MMP1509||11, 20|
|MMP1512||alr||alanine racemase||8, 21|
|MMP1513||ald||alanine dehydrogenase||8, 21|
|MMP1527||aspartate aminotransferase||8, 21|
|MMP1531||hypothetical protein MMP1531||8, 66|
|MMP1584||spermidine synthase||11, 21|
|MMP1588||serA||D-3-phosphoglycerate dehydrogenase||7, 8, 27, 77|
|MMP1656||glutamine amidotransferase subunit PdxT||8, 137|
|MMP1698||hypothetical protein MMP1698||4, 8|
|MMP1705||creatininase||8, 11, 20|
|MMP1706||H/ACA RNA-protein complex component Nop10p||20, 21|
|MMP1707||aIF2_alpha||translation initiation factor IF-2 subunit alpha||20, 21|
|MMP1708||rps27e||30S ribosomal protein S27e||11, 20|
|MMP1709||rpl44e||50S ribosomal protein L44e||11, 20|
|MMP1710||hypothetical protein MMP1710||20, 87, 92|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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CircVisOur circular module explorer is adapted from visquick originally developed by Dick Kreisberg of Ilya Shmulevich lab at ISB for The Cancer Genome Atlas. We use simplified version of visquick to display distribution of module members and their interactions across the genome. This view provides summary of regulation information for a gene. The main components are;
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