Organism : Methanococcus maripaludis S2 | Module List :
Regulation information for MMP1106(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 6 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for MMP1106
|Gene||Common Name||Description||Module membership|
|MMP0046||hypothetical protein MMP0046||20, 51, 140|
|MMP0074||hypothetical protein MMP0074||51, 140|
|MMP0106||hypothetical protein MMP0106||107, 140|
|MMP0133||guaB||inosine-5'-monophosphate dehydrogenase||25, 120, 140|
|MMP0145||hpt||adenine phosphoribosyltransferase||137, 143|
|MMP0146||hypothetical protein MMP0146||17, 41, 137|
|MMP0187||thiC||thiamine biosynthesis protein ThiC||137, 143|
|MMP0210||hypothetical protein MMP0210||58, 140|
|MMP0212||glycyl-tRNA synthetase||81, 107|
|MMP0220||Sodium/proline symporter-related||70, 140|
|MMP0224||hemL||glutamate-1-semialdehyde aminotransferase||60, 130, 140|
|MMP0282||purE||phosphoribosylaminoimidazole carboxylase catalytic subunit||7, 140|
|MMP0297||aIF-2_beta||translation initiation factor IF-2 subunit beta||60, 81|
|MMP0319||cbiL||precorrin-2 C-20 methyltransferase||24, 140, 141, 149|
|MMP0346||2-hydroxyglutaryl-CoA dehydratase subunit D-like protein||7, 140|
|MMP0356||group 1 glycosyl transferase||80, 139, 140|
|MMP0404||cofD||2-phospho-L-lactate transferase||87, 137|
|MMP0414||thrS||threonyl-tRNA synthetase||8, 81, 112|
|MMP0418||carbohydrate kinase PfkB||60, 137, 143|
|MMP0530||hypothetical protein MMP0530||92, 140|
|MMP0531||hypothetical protein MMP0531||106, 140|
|MMP0541||serB||phosphoserine phosphatase SerB||7, 40, 139, 140|
|MMP0550||amino acid ABC transporter periplasmic protein||81, 140|
|MMP0554||SAM-binding motif-containing protein||129, 140|
|MMP0588||dph5||diphthine synthase||25, 81, 140|
|MMP0596||C/D box methylation guide ribonucleoprotein complex aNOP56 subunit||20, 81|
|MMP0597||flpA||fibrillarin||8, 16, 81|
|MMP0606||ribosomal RNA methyltransferase RrmJ/FtsJ||137, 143|
|MMP0607||nrpR||hypothetical protein MMP0607||115, 137, 143|
|MMP0609||pth2||peptidyl-tRNA hydrolase||66, 140|
|MMP0705||wbpI||UDP-N-acetylglucosamine 2-epimerase||80, 140|
|MMP0707||sodium/hydrogen exchanger||87, 109, 140|
|MMP0865||aminotransferase (subgroup II) adenosylmethionine-8-amino-7-oxononanoate aminotransferase||115, 140|
|MMP0878||ribonuclease P-like protein||25, 87, 140|
|MMP0880||aksF||isopropylmalate/isohomocitrate dehydrogenase||24, 60, 140, 143|
|MMP0881||hypothetical protein MMP0881||111, 137|
|MMP0899||ATP/GTP-binding motif-containing protein||70, 81|
|MMP0900||rhodanese domain-containing protein||70, 81|
|MMP0946||gatB||aspartyl/glutamyl-tRNA amidotransferase subunit B||8, 81, 96|
|MMP0999||hypothetical protein MMP0999||95, 140|
|MMP1063||leuA||2-isopropylmalate synthase||81, 143|
|MMP1068||K+-dependent Na+/Ca+ exchanger related-protein:Sodium/calcium exchanger membrane region||81, 140|
|MMP1081||wbpG||putative LPS biosynthesis protein WbpG||137, 143|
|MMP1083||imidazole glycerol phosphate synthase subunit HisF||137, 143|
|MMP1105||sucC||succinate-CoA ligase (ADP-forming), beta chain||7, 81, 137|
|MMP1106||hypothetical protein MMP1106||81, 137, 140|
|MMP1122||translation-associated GTPase||137, 143|
|MMP1131||peptide chain release factor 1||20, 81|
|MMP1146||purF||amidophosphoribosyltransferase||7, 60, 137, 143|
|MMP1206||glnA||glutamine synthetase||99, 137|
|MMP1242||nadA||quinolinate synthetase||27, 81|
|MMP1312||hypothetical protein MMP1312||52, 140|
|MMP1316||korB||2-oxoglutarate ferredoxin oxidoreductase subunit beta||7, 120, 137|
|MMP1326||rpoN||DNA-directed RNA polymerase subunit N||103, 118, 140|
|MMP1353||hypothetical protein MMP1353||81, 140|
|MMP1356||PP-loop domain-containing protein||25, 129, 139, 140, 149|
|MMP1357||hypothetical protein MMP1357||140, 149|
|MMP1362||rpoB1||DNA-directed RNA polymerase subunit B'||63, 130, 140|
|MMP1425||tRNA 2'-O-methylase||25, 87, 140|
|MMP1426||dcd||bifunctional dCTP deaminase/dUTP diphosphatase||16, 112, 140|
|MMP1427||hypothetical protein MMP1427||81, 112|
|MMP1438||hypothetical protein MMP1438||14, 140|
|MMP1440||tRNA-modifying protein||129, 137|
|MMP1496||pheS||phenylalanyl-tRNA synthetase subunit alpha||137, 143|
|MMP1532||pgk||phosphoglycerate kinase||120, 137|
|MMP1540||hypothetical protein MMP1540||24, 140|
|MMP1656||glutamine amidotransferase subunit PdxT||8, 137|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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CircVisOur circular module explorer is adapted from visquick originally developed by Dick Kreisberg of Ilya Shmulevich lab at ISB for The Cancer Genome Atlas. We use simplified version of visquick to display distribution of module members and their interactions across the genome. This view provides summary of regulation information for a gene. The main components are;
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