Organism : Methanococcus maripaludis S2 | Module List :
Regulation information for MMP0609(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Functional Enrichment for MMP0609
Module neighborhood information for MMP0609
|Gene||Common Name||Description||Module membership|
|MMP0014||truD||tRNA pseudouridine synthase D||66, 107|
|MMP0015||hypothetical protein MMP0015||66, 107|
|MMP0022||hypothetical protein MMP0022||13, 66|
|MMP0023||hypothetical protein MMP0023||13, 66|
|MMP0046||hypothetical protein MMP0046||20, 51, 140|
|MMP0074||hypothetical protein MMP0074||51, 140|
|MMP0106||hypothetical protein MMP0106||107, 140|
|MMP0133||guaB||inosine-5'-monophosphate dehydrogenase||25, 120, 140|
|MMP0179||purL||phosphoribosylformylglycinamidine synthase||66, 143|
|MMP0210||hypothetical protein MMP0210||58, 140|
|MMP0220||Sodium/proline symporter-related||70, 140|
|MMP0224||hemL||glutamate-1-semialdehyde aminotransferase||60, 130, 140|
|MMP0282||purE||phosphoribosylaminoimidazole carboxylase catalytic subunit||7, 140|
|MMP0319||cbiL||precorrin-2 C-20 methyltransferase||24, 140, 141, 149|
|MMP0346||2-hydroxyglutaryl-CoA dehydratase subunit D-like protein||7, 140|
|MMP0356||group 1 glycosyl transferase||80, 139, 140|
|MMP0530||hypothetical protein MMP0530||92, 140|
|MMP0531||hypothetical protein MMP0531||106, 140|
|MMP0541||serB||phosphoserine phosphatase SerB||7, 40, 139, 140|
|MMP0550||amino acid ABC transporter periplasmic protein||81, 140|
|MMP0554||SAM-binding motif-containing protein||129, 140|
|MMP0588||dph5||diphthine synthase||25, 81, 140|
|MMP0609||pth2||peptidyl-tRNA hydrolase||66, 140|
|MMP0705||wbpI||UDP-N-acetylglucosamine 2-epimerase||80, 140|
|MMP0707||sodium/hydrogen exchanger||87, 109, 140|
|MMP0844||hypothetical protein MMP0844||66, 133|
|MMP0865||aminotransferase (subgroup II) adenosylmethionine-8-amino-7-oxononanoate aminotransferase||115, 140|
|MMP0868||proV||ABC transporter ATPase||41, 66|
|MMP0878||ribonuclease P-like protein||25, 87, 140|
|MMP0880||aksF||isopropylmalate/isohomocitrate dehydrogenase||24, 60, 140, 143|
|MMP0936||aroE||shikimate 5-dehydrogenase||66, 107|
|MMP0945||glyceraldehyde-3-phosphate ferredoxin oxidoreductase||66, 98|
|MMP0999||hypothetical protein MMP0999||95, 140|
|MMP1034||tmk||thymidylate kinase||66, 68|
|MMP1068||K+-dependent Na+/Ca+ exchanger related-protein:Sodium/calcium exchanger membrane region||81, 140|
|MMP1082||hisH||imidazole glycerol phosphate synthase subunit HisH||66, 143|
|MMP1090||NAD-dependent epimerase/dehydratase||66, 133|
|MMP1095||phosphate-binding protein||66, 89|
|MMP1096||phosphate ABC transporter inner membrane protein||66, 89|
|MMP1097||phosphate ABC transporter inner membrane protein||66, 89|
|MMP1098||pstB||phosphate ABC transporter ATP-binding protein||66, 89|
|MMP1099||phosphate transporter PhoU||66, 89, 95|
|MMP1106||hypothetical protein MMP1106||81, 137, 140|
|MMP1171||pssA||CDP-diacylglycerol--serine O-phosphatidyltransferase||28, 66|
|MMP1303||sensory transduction histidine kinase||4, 28, 66|
|MMP1312||hypothetical protein MMP1312||52, 140|
|MMP1326||rpoN||DNA-directed RNA polymerase subunit N||103, 118, 140|
|MMP1353||hypothetical protein MMP1353||81, 140|
|MMP1356||PP-loop domain-containing protein||25, 129, 139, 140, 149|
|MMP1357||hypothetical protein MMP1357||140, 149|
|MMP1362||rpoB1||DNA-directed RNA polymerase subunit B'||63, 130, 140|
|MMP1425||tRNA 2'-O-methylase||25, 87, 140|
|MMP1426||dcd||bifunctional dCTP deaminase/dUTP diphosphatase||16, 112, 140|
|MMP1438||hypothetical protein MMP1438||14, 140|
|MMP1454||ehaG||hypothetical protein MMP1454||66, 117, 133|
|MMP1455||ehaH||putative transmembrane subunit of a hydrogenase||66, 133|
|MMP1456||ehaI||hypothetical protein MMP1456||66, 117, 133|
|MMP1457||ehaJ||energy conserving hydrogenase A integral membrane subunit||66, 133|
|MMP1458||ehaK||hypothetical protein MMP1458||66, 133|
|MMP1459||ehaL||hypothetical protein MMP1459||66, 117, 133|
|MMP1460||ehaM||hypothetical protein MMP1460||66, 133|
|MMP1462||ehaO||energy conserving hydrogenase A large subunit||66, 133|
|MMP1531||hypothetical protein MMP1531||8, 66|
|MMP1540||hypothetical protein MMP1540||24, 140|
|MMP1662||cbiF||precorrin-4 C11-methyltransferase||66, 117|
|MMP1665||HEAT domain-containing protein||66, 117|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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Identity of gene members in a module may help to identify potential interactions between different functional modules. Therefore, neighbor genes that share the same module(s) with gene under consideration are shown here. For each memebr, gene name, description and modules that contain it are listed.
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CircVisOur circular module explorer is adapted from visquick originally developed by Dick Kreisberg of Ilya Shmulevich lab at ISB for The Cancer Genome Atlas. We use simplified version of visquick to display distribution of module members and their interactions across the genome. This view provides summary of regulation information for a gene. The main components are;
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