Rv0047c Transcriptional regulator, PadR family

Rv0047c (Transcriptional regulator, PadR family) is predicted to be co-regulated in modules bicluster_0402 with residual 0.39 and bicluster_0509 with residual 0.59.

This regulation is possibly mediated by two de-novo identified cis-regulatory motifs in each module with e-values , 0.00 and 650.00 for bicluster_0402 and 53.00 and 2,600.00 for bicluster_0509 respectively.

These modules are enriched for following go terms: .

This gene is found to be for growth on cholesterol.

Mutant available?:

Displaying 51 - 60 of 229
Gene Target Differential Expression Distance Expression pvalue Type
Cystathionine beta-synthase (EC 4.2.1.22)
No 14 -0.21 0.376444 Primary.TSS
No -10 -0.06 0.938431 Primary.TSS
PROBABLE CHOLESTEROL DEHYDROGENASE
No -4 0.02 0.961202 CDS
PROBABLE CHOLESTEROL DEHYDROGENASE
No 8 0.02 0.961202 Internal.TSS
Respiratory nitrate reductase beta chain (EC 1.7.99.4)
No -37 -0.01 0.974136 Internal.TSS
Respiratory nitrate reductase gamma chain (EC 1.7.99.4)
No -55 0.13 0.654939 Internal.TSS
GTP-binding protein TypA/BipA
No -55 0.17 0.592057 Primary.TSS
Transcriptional regulator, PadR family
No -109 0.4 0.512059 Primary.TSS
Polyketide synthase
No -34 -0.24 0.456617 Primary.TSS
POSSIBLE EXPORTED PROTEIN
No -13 -0.13 0.834474 Primary.TSS
not assigned to any KEGG Pathway.
No TFOE experiment results were found

TRIP log2 fold abundance change

NA
Displaying 1 - 17 of 17
Condition Count Day Doublings Fitness U.I Plots
D0U 27 0 0.00 11.48 U
D3I 3 3 3.83 10.97 I
D3U 3 3 3.83 11.73 U
D5I 9 5 6.00 8.66 I
D5U 17 5 6.00 9.71 U
D7I 18 7 8.14 9.30 I
D7U 19 7 8.14 10.18 U
D14I 4 14 15.63 4.10 I
D14U 4 14 15.63 8.10 U
D17I 3 17 19.15 I
D17U 3 17 19.15 6.35 U
D21I 4 21 23.23 1.11 I
D21U 4 21 23.23 6.04 U
D24I 3 24 26.60 I
D24U 3 24 26.60 4.50 U
D28I 4 28 30.61 I
D28U 4 28 30.61 4.49 U