Rv0678

Rv0678 () is predicted to be co-regulated in modules bicluster_0300 with residual 0.49 and bicluster_0397 with residual 0.58.

This regulation is possibly mediated by two de-novo identified cis-regulatory motifs in each module with e-values , 0.00 and 1.40 for bicluster_0300 and 0.00 and 0.00 for bicluster_0397 respectively.

These modules are enriched for following go terms: tricarboxylic acid cycle enzyme complex, acid-thiol ligase activity, ligase activity, forming carbon-sulfur b... nitrogen compound metabolic process, carbon-oxygen lyase activity.

This gene is found to be for growth on cholesterol.

Mutant available?:

Displaying 201 - 210 of 268
Gene Target Differential Expression Distance Expression pvalue Type
No 12 -0.53 0.0487564 Antisense.TSS
No 43 0.02 0.957248 Primary.TSS
EmrB/QacA family drug resistance transporter
No 26 -0.03 0.934001 Primary.TSS
Immunogenic protein Mpt70
No -14 0.66 0.0581059 CDS
Transcriptional regulatory protein glnR
No -27 -0.34 0.418387 CDS
No 31 -0.01 0.932227 CDS
LSU ribosomal protein L19p
No 51 -0.43 0.0156793 Primary.TSS
Putative lipoprotein lppW precursor
Repressed -49 -0.68 0.0000000129 Primary.TSS
Putative conserved polyketide synthase-associated protein PapA5
No 31 0.01 0.99078 CDS
(MTCY24G1.02), len: 496 aa, Probable polyketide synthase, almost identical to G560508 PKS002B (495 aa), fasta scores, opt: 3270, E(): 0, (99.6% identity in 496 aa overlap); contains PS00606 Beta-ketoacyl synthases active site; similar to MTCY338.20 (49.9% identity in 465 aa overlap) and MTCY24G1.09 (50.2% identity in 454 aa overlap) and MTCY22H8.03 (47.6% identity in 437 aa overlap)
No -59 -0.02 0.961584 CDS
not assigned to any KEGG Pathway.
GO:0006355

regulation of transcription, DNA-dependent

regulation of transcription, DNA-dependent

Details: 
Any process that modulates the frequency, rate or extent of cellular DNA-dependent transcription.
GO Category: 
biological_process
15
Total items in this category:  
No TFOE experiment results were found

TRIP log2 fold abundance change

NA
Displaying 1 - 17 of 17
Condition Count Day Doublings Fitness U.I Plots
D0U 27 0 0.00 13.19 U
D3I 3 3 3.83 13.23 I
D3U 3 3 3.83 12.65 U
D5I 9 5 6.00 9.29 I
D5U 17 5 6.00 10.09 U
D7I 18 7 8.14 10.70 I
D7U 19 7 8.14 13.18 U
D14I 4 14 15.63 8.46 I
D14U 4 14 15.63 13.79 U
D17I 3 17 19.15 4.72 I
D17U 3 17 19.15 14.16 U
D21I 4 21 23.23 4.45 I
D21U 4 21 23.23 13.42 U
D24I 3 24 26.60 3.27 I
D24U 3 24 26.60 13.79 U
D28I 4 28 30.61 3.93 I
D28U 4 28 30.61 12.89 U