Rv0678

Rv0678 () is predicted to be co-regulated in modules bicluster_0300 with residual 0.49 and bicluster_0397 with residual 0.58.

This regulation is possibly mediated by two de-novo identified cis-regulatory motifs in each module with e-values , 0.00 and 1.40 for bicluster_0300 and 0.00 and 0.00 for bicluster_0397 respectively.

These modules are enriched for following go terms: tricarboxylic acid cycle enzyme complex, acid-thiol ligase activity, ligase activity, forming carbon-sulfur b... nitrogen compound metabolic process, carbon-oxygen lyase activity.

This gene is found to be for growth on cholesterol.

Mutant available?:

Displaying 21 - 30 of 268
Gene Target Differential Expression Distance Expression pvalue Type
No 41 -0.3 0.138283 Primary.TSS
Iron-sulphur-binding reductase
No -19 -0.06 0.763082 Primary.TSS
No -25 0.46 0.245306 Antisense.TSS
No 22 0.46 0.245306 Internal.TSS
Preprotein translocase subunit SecE2
No -4 0.1 0.847409 Primary.TSS
ClpB protein
No 31 0.19 0.606046 Primary.TSS
PPE family protein
Repressed 33 -1.03 0.000000379 Primary.TSS
Phosphoribosylglycinamide formyltransferase 2 (EC 2.1.2.-)
Repressed -17 -1.57 4.16e-18 Primary.TSS
NADH dehydrogenase (EC 1.6.99.3)
Induced -146 0.74 0.00131677 Primary.TSS
Possible membrane protein
No 17 0.22 0.417364 Primary.TSS
not assigned to any KEGG Pathway.
GO:0006355

regulation of transcription, DNA-dependent

regulation of transcription, DNA-dependent

Details: 
Any process that modulates the frequency, rate or extent of cellular DNA-dependent transcription.
GO Category: 
biological_process
15
Total items in this category:  
No TFOE experiment results were found
TRIP log2 fold abundance change
NA
Displaying 1 - 17 of 17
Condition Count Day Doublings Fitness U.I Plots
D0U 27 0 0.00 13.19 U
D3I 3 3 3.83 13.23 I
D3U 3 3 3.83 12.65 U
D5I 9 5 6.00 9.29 I
D5U 17 5 6.00 10.09 U
D7I 18 7 8.14 10.70 I
D7U 19 7 8.14 13.18 U
D14I 4 14 15.63 8.46 I
D14U 4 14 15.63 13.79 U
D17I 3 17 19.15 4.72 I
D17U 3 17 19.15 14.16 U
D21I 4 21 23.23 4.45 I
D21U 4 21 23.23 13.42 U
D24I 3 24 26.60 3.27 I
D24U 3 24 26.60 13.79 U
D28I 4 28 30.61 3.93 I
D28U 4 28 30.61 12.89 U