Rv1032c Sensor protein basS/pmrB (EC 2.7.3.-)

Symbol Product Feature Type Start End Strand Length AA Length is TF
Rv1032c trcS Sensor protein basS/pmrB (EC 2.7.3.-) CDS 1156426 1157955 - 1 530 509 FALSE

Rv1032c (Sensor protein basS/pmrB (EC 2.7.3.-)) is predicted to be co-regulated in modules bicluster_0028 with residual 0.52 and bicluster_0299 with residual 0.50.

This regulation is possibly mediated by two de-novo identified cis-regulatory motifs in each module with e-values , 0.00 and 1.50 for bicluster_0028 and 0.00 and 48.00 for bicluster_0299 respectively.

These modules are enriched for following go terms: signal transduction, signaling, single organism signaling, cell communication, response to stimulus, signal transducer activity, molecular transducer activity, phosphorelay sensor kinase activity, receptor activity, signaling receptor activity .

This gene is found to be for growth on cholesterol.

Mutant available?: Yes

BASS Score Re-Annotated Start Tuberculist Annotated Start
-0.226 1157886 1157955
Last update: 10/16/2017 - 11:08
BEI Mutant Available BEI Mutant ID BEI MT Number BEI Target ID Order from BEI
Yes NR-13503 MT1061 278
Product (LegacyBRC) Product (RefSeq)
Sensor protein two component sensor histidine kinase TRCS
Operon # Operon
691 -
PATRIC Locus Tag Enzyme Name PATRIC Pathways Transcriptomics


Not assigned Not assigned
Locus Tuberculist Genome View


Locus Tag KEGG Pathways


Two-component system

Total items in this category:  
BioCyc Gene Page Cellular Overview Map
Link to STRING STRING Network


GI Number Protein ID Blast Conserved Domains
15608172 NP_215548.1 Run

protein kinase activity

protein kinase activity

Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP.
GO Category: 
Total items in this category:  

calcium ion binding

calcium ion binding

Interacting selectively and non-covalently with calcium ions (Ca2+).
GO Category: 
Total items in this category:  

manganese ion binding

manganese ion binding

Interacting selectively and non-covalently with manganese (Mn) ions.
GO Category: 
Total items in this category:  

protein autophosphorylation

protein autophosphorylation

The phosphorylation by a protein of one or more of its own amino acid residues, or residues on an identical protein.
GO Category: 
Total items in this category:  
No TFOE experiment results were found
Quantitative Proteomics Data
t-test p-value Cholesterol/Glycerol Ratio
0.230000 1.21

How essentiality calculations were done?

The relative representation of each mutant was determined by calculating the fold change (sequence reads/insertion in cholesterol divided by sequence reads/insertion in glycerol) for each gene. Statistical significance was determined by t-test. Each insertion site in each replicate sample was treated as a separate data point. The hyperbola used for defining genes specifically required for growth in cholesterol was defined by the formula, y = 3.8/x+0.7. Genes above this line are annotated as required for growth on cholesterol.

TRIP log2 fold abundance change

reports the log2 abundance fold change of each TFI strain, relative to no induction, in absence or presence of drug, averaged across experimental replicates. Also reported are the accompanying z-scores and two-sided t-test p-values for each TFI strain under each condition. Please refer to Ma et al., 2020, Nature Microbiology for more information.

p-value Untreated:
p-value INH: