Rv1816 Transcriptional regulator, TetR family

Rv1816 (Transcriptional regulator, TetR family) is predicted to be co-regulated in modules bicluster_0173 with residual 0.41 and bicluster_0443 with residual 0.45.

This regulation is possibly mediated by two de-novo identified cis-regulatory motifs in each module with e-values , 11.00 and 12,000.00 for bicluster_0173 and 0.00 and 0.40 for bicluster_0443 respectively.

These modules are enriched for following go terms: cellular biosynthetic process, organic substance biosynthetic process, cytoplasm, RNA binding.

This gene is found to be for growth on cholesterol.

Mutant available?: Yes

Displaying 121 - 130 of 143
Gene Target Differential Expression Distance Expression pvalue Type
COG0028: Thiamine pyrophosphate-requiring enzymes
No -12 0.39 0.147907 CDS
Acetaldehyde dehydrogenase, acetylating, (EC 1.2.1.10) in gene cluster for degradation of phenols, cresols, catechol
No -130 0.6 0.273056 CDS
No -86 0.08 0.95588 CDS
DNA polymerase III delta prime subunit (EC 2.7.7.7)
No -87 -0.06 0.93012 Primary.TSS
Adenylate cyclase (EC 4.6.1.1)
No -87 0.01 0.992554 Antisense.TSS
Adenylate cyclase (EC 4.6.1.1)
No 68 0.01 0.992554 Internal.TSS
Phosphoserine phosphatase (EC 3.1.3.3)
No 63 0.09 0.833612 Primary.TSS
Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-)
No 28 -0.02 0.965766 Primary.TSS
POSSIBLE CONSERVED TRANSMEMBRANE PROTEIN
No -123 -0.03 0.960417 Primary.TSS
Cell division protein DivIC (FtsB), stabilizes FtsL against RasP cleavage
No -37 -0.19 0.507296 Primary.TSS
not assigned to any KEGG Pathway.
No TFOE experiment results were found
TRIP log2 fold abundance change
NA
Displaying 1 - 17 of 17
Condition Count Day Doublings Fitness U.I Plots
D0U 27 0 0.00 12.07 U
D3I 3 3 3.83 12.26 I
D3U 3 3 3.83 11.96 U
D5I 9 5 6.00 12.69 I
D5U 17 5 6.00 12.43 U
D7I 18 7 8.14 12.30 I
D7U 19 7 8.14 11.73 U
D14I 4 14 15.63 13.41 I
D14U 4 14 15.63 12.52 U
D17I 3 17 19.15 13.71 I
D17U 3 17 19.15 12.66 U
D21I 4 21 23.23 13.23 I
D21U 4 21 23.23 12.39 U
D24U 3 24 26.60 12.22 U
D24I 3 24 26.60 13.29 I
D28I 4 28 30.61 12.79 I
D28U 4 28 30.61 12.00 U