Rv2989 Transcriptional regulator, IclR family

Rv2989 (Transcriptional regulator, IclR family) is predicted to be co-regulated in modules bicluster_0286 with residual 0.44 and bicluster_0344 with residual 0.49.

This regulation is possibly mediated by two de-novo identified cis-regulatory motifs in each module with e-values , 4.30 and 5.80 for bicluster_0286 and 0.10 and 8.00 for bicluster_0344 respectively.

These modules are enriched for following go terms: branched-chain amino acid biosynthetic p..., branched-chain amino acid metabolic proc..., cytosol, cytosolic part .

This gene is found to be for growth on cholesterol.

Mutant available?:

Displaying 11 - 20 of 72
Gene Target Differential Expression Distance Expression pvalue Type
No -150 0.07 0.94812 Antisense.TSS
ClpB protein
No 43 -0.19 0.805375 Primary.TSS
Flavohemoprotein (Hemoglobin-like protein) (Flavohemoglobin) (Nitric oxide dioxygenase) (EC 1.14.12.17)
No -68 0.14 0.854864 Primary.TSS
POSSIBLE MYCOLIC ACID SYNTHASE UMAA1
No 10 0.09 0.896513 Primary.TSS
\Transporter, LysE family\\\""
No -85 0.34 0.622895 CDS
Transcriptional regulator, TetR family
No 58 -0.54 0.461213 CDS
\Lignostilbene-alpha,beta-dioxygenase and related enzymes\\\""
No 20 -0.3 0.708846 Primary.TSS
POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN
No 4 -0.29 0.61244 Primary.TSS
DNA-binding response regulator
No -36 0.07 0.916112 Primary.TSS
Methyltransferase (EC 2.1.1.-)
No -24 -0.12 0.937554 Primary.TSS
not assigned to any KEGG Pathway.
GO:0005886

plasma membrane

plasma membrane

Details: 
The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
GO Category: 
cellular_component
1284
Total items in this category:  
No TFOE experiment results were found
TRIP log2 fold abundance change
NA
Displaying 1 - 17 of 17
Condition Count Day Doublings Fitness U.I Plots
D0U 27 0 0.00 11.99 U
D3I 3 3 3.83 12.29 I
D3U 3 3 3.83 12.15 U
D5I 9 5 6.00 9.55 I
D5U 17 5 6.00 10.00 U
D7I 18 7 8.14 10.53 I
D7U 19 7 8.14 11.10 U
D14I 4 14 15.63 6.98 I
D14U 4 14 15.63 9.98 U
D17I 3 17 19.15 5.52 I
D17U 3 17 19.15 9.61 U
D21I 4 21 23.23 5.39 I
D21U 4 21 23.23 9.29 U
D24I 3 24 26.60 4.03 I
D24U 3 24 26.60 8.97 U
D28I 4 28 30.61 4.56 I
D28U 4 28 30.61 9.30 U