Rv2989 Transcriptional regulator, IclR family

Rv2989 (Transcriptional regulator, IclR family) is predicted to be co-regulated in modules bicluster_0286 with residual 0.44 and bicluster_0344 with residual 0.49.

This regulation is possibly mediated by two de-novo identified cis-regulatory motifs in each module with e-values , 4.30 and 5.80 for bicluster_0286 and 0.10 and 8.00 for bicluster_0344 respectively.

These modules are enriched for following go terms: branched-chain amino acid biosynthetic p..., branched-chain amino acid metabolic proc..., cytosol, cytosolic part .

This gene is found to be for growth on cholesterol.

Mutant available?:

Displaying 31 - 40 of 72
Gene Target Differential Expression Distance Expression pvalue Type
Putative membrane protein found fused to lysyl-tRNA synthetase like protein / Lysyl-tRNA synthetase (class II) related protein found fused to membrane protein
No 65 -0.26 0.547426 CDS
Segregation and condensation protein A
No -52 0.07 0.928709 Primary.TSS
No -2 -0.13 0.877579 Primary.TSS
Catalase (EC 1.11.1.6) / Peroxidase (EC 1.11.1.7)
No 9 0.2 0.81679 CDS
No -48 0.15 0.624113 Antisense.TSS
No -48 0.12 0.899733 Primary.TSS
Transporter, LysE family
No -8 0.27 0.750048 Primary.TSS
No -12 0 0.998371 Antisense.TSS
PE family protein
No -7 0.97 0.426963 Primary.TSS
DNA-binding protein, CopG family
No -11 -0.06 0.961789 Primary.TSS
not assigned to any KEGG Pathway.
GO:0005886

plasma membrane

plasma membrane

Details: 
The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
GO Category: 
cellular_component
1284
Total items in this category:  
No TFOE experiment results were found
TRIP log2 fold abundance change
NA
Displaying 1 - 17 of 17
Condition Count Day Doublings Fitness U.I Plots
D0U 27 0 0.00 11.99 U
D3I 3 3 3.83 12.29 I
D3U 3 3 3.83 12.15 U
D5I 9 5 6.00 9.55 I
D5U 17 5 6.00 10.00 U
D7I 18 7 8.14 10.53 I
D7U 19 7 8.14 11.10 U
D14I 4 14 15.63 6.98 I
D14U 4 14 15.63 9.98 U
D17I 3 17 19.15 5.52 I
D17U 3 17 19.15 9.61 U
D21I 4 21 23.23 5.39 I
D21U 4 21 23.23 9.29 U
D24I 3 24 26.60 4.03 I
D24U 3 24 26.60 8.97 U
D28I 4 28 30.61 4.56 I
D28U 4 28 30.61 9.30 U