Rv2989 Transcriptional regulator, IclR family

Rv2989 (Transcriptional regulator, IclR family) is predicted to be co-regulated in modules bicluster_0286 with residual 0.44 and bicluster_0344 with residual 0.49.

This regulation is possibly mediated by two de-novo identified cis-regulatory motifs in each module with e-values , 4.30 and 5.80 for bicluster_0286 and 0.10 and 8.00 for bicluster_0344 respectively.

These modules are enriched for following go terms: branched-chain amino acid biosynthetic p..., branched-chain amino acid metabolic proc..., cytosol, cytosolic part .

This gene is found to be for growth on cholesterol.

Mutant available?:

Displaying 61 - 70 of 72
Gene Target Differential Expression Distance Expression pvalue Type
No 54 -0.35 0.515596 Primary.TSS
PROBABLE MEMBRANE PROTEIN
No -139 0.1 0.867975 CDS
No -56 0.02 0.991146 CDS
Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] (EC 2.6.1.16)
No -73 -0.24 0.63314 Internal.TSS
4-hydroxy-2-oxovalerate aldolase (EC 4.1.3.-)
No -42 -0.15 0.858912 CDS
No -104 0.52 0.393416 Internal.TSS
Histone protein Lsr2
No 45 -0.13 0.841071 Primary.TSS
No -58 -0.24 0.754839 CDS
FAD/FMN-containing dehydrogenases
No -106 0.17 0.637216 CDS
FAD/FMN-containing dehydrogenases
No -141 0.17 0.637216 Internal.TSS
not assigned to any KEGG Pathway.
GO:0005886

plasma membrane

plasma membrane

Details: 
The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
GO Category: 
cellular_component
1284
Total items in this category:  
No TFOE experiment results were found
TRIP log2 fold abundance change
NA
Displaying 1 - 17 of 17
Condition Count Day Doublings Fitness U.I Plots
D0U 27 0 0.00 11.99 U
D3I 3 3 3.83 12.29 I
D3U 3 3 3.83 12.15 U
D5I 9 5 6.00 9.55 I
D5U 17 5 6.00 10.00 U
D7I 18 7 8.14 10.53 I
D7U 19 7 8.14 11.10 U
D14I 4 14 15.63 6.98 I
D14U 4 14 15.63 9.98 U
D17I 3 17 19.15 5.52 I
D17U 3 17 19.15 9.61 U
D21I 4 21 23.23 5.39 I
D21U 4 21 23.23 9.29 U
D24I 3 24 26.60 4.03 I
D24U 3 24 26.60 8.97 U
D28I 4 28 30.61 4.56 I
D28U 4 28 30.61 9.30 U