Organism : Rhodobacter sphaeroides 2.4.1 | Module List :
Regulation information for RSP_3507(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Functional Enrichment for RSP_3507
Module neighborhood information for RSP_3507
|Gene||Common Name||Description||Module membership|
|RSP_0282||ppsR||Transcriptional regulator, PpsR (NCBI)||358, 381|
|RSP_0368||RSP_0368||CTP synthase (NCBI)||65, 384|
|RSP_0384||RSP_0384||hypothetical protein (NCBI)||329, 381|
|RSP_0407||RSP_0407||putative lactate dehydrogenase (NCBI)||175, 384|
|RSP_0415||RSP_0415||sigma-24 (NCBI)||308, 381|
|RSP_0599||RSP_0599||Probable DNA/pantothenate metabolism flavoprotein (NCBI)||242, 381|
|RSP_0708||RSP_0708||NUDIX hydrolase (NCBI)||242, 381|
|RSP_0710||dnaX||DNA polymerase III tau and gamma subunits (NCBI)||173, 381|
|RSP_0713||RSP_0713||hypothetical protein (NCBI)||96, 384|
|RSP_0722||RSP_0722||transcriptional regulator, AsnC family (NCBI)||254, 384|
|RSP_0894||RSP_0894||hypothetical protein (NCBI)||175, 384|
|RSP_1031||RSP_1031||Endonuclease III (NCBI)||110, 384|
|RSP_1099||LspA||signal peptidase II (NCBI)||113, 384|
|RSP_1161||RSP_1161||3'-Phosphadenosine 5'-phosphosulfate 3'-phosphatase (NCBI)||109, 384|
|RSP_1188||wcaG||Nucleotide sugar epimerase/dehydratase (NCBI)||59, 381|
|RSP_1214||RSP_1214||putative branched-chain amino acid aminotransferase (NCBI)||215, 381|
|RSP_1215||ilvE||putative IlvE, Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase (NCBI)||68, 381|
|RSP_1340||RSP_1340||Enoyl-CoA hydratase/isomerase (NCBI)||67, 384|
|RSP_1342||dnaA||chromosomal replication initiator protein, DnaA (NCBI)||25, 381|
|RSP_1367||RSP_1367||Nicotinate phosphoribosyltransferase (NCBI)||207, 384|
|RSP_1368||pncA||probable pyrazinamidase/nicotinamidase (NCBI)||136, 384|
|RSP_1379||RSP_1379||Cytosol aminopeptidase (NCBI)||175, 384|
|RSP_1404||RSP_1404||Orotidine 5'-phosphate decarboxylase (NCBI)||311, 381|
|RSP_1405||RSP_1405||ROK family protein (NCBI)||285, 381|
|RSP_1520||prrB||Sensor histidine kinase PrrB (RegB) (NCBI)||16, 381|
|RSP_1553||RSP_1553||Probable glyoxylate induced protein (NCBI)||102, 381|
|RSP_1554||RSP_1554||Possible polysaccharide deacetylase (NCBI)||102, 381|
|RSP_1555||RSP_1555||Transthyretin-like protein (NCBI)||329, 381|
|RSP_1566||RSP_1566||hypothetical protein (NCBI)||176, 381|
|RSP_1621||RSP_1621||Deoxyguanosinetriphosphate triphosphohydrolase-like protein (NCBI)||93, 381|
|RSP_1754||RSP_1754||hypothetical protein (NCBI)||72, 384|
|RSP_1894||RSP_1894||hypothetical protein (NCBI)||323, 381|
|RSP_1908||RSP_1908||outer membrane protein, OmpA/MotB family (NCBI)||72, 381|
|RSP_1909||RSP_1909||Outer membrane general secretion pathway protein, Secretin (NCBI)||221, 381|
|RSP_1946||RSP_1946||Cytochrome P450 hydroxylase (NCBI)||175, 381|
|RSP_1983||sqdA||Phospholipid/glycerol acyltransferase (NCBI)||293, 384|
|RSP_2103||murD||UDP-N-acetylmuramoylalanine--D-glutamate ligase (NCBI)||256, 384|
|RSP_2119||RSP_2119||hypothetical protein (NCBI)||10, 381|
|RSP_2192||mcmA||Methylmalonyl-CoA mutase (NCBI)||65, 384|
|RSP_2694||RSP_2694||hypothetical protein (NCBI)||357, 381|
|RSP_2869||RSP_2869||Possible tellurite resistance protein (NCBI)||329, 381|
|RSP_2882||RSP_2882||two component transcriptional regulator, LuxR family (NCBI)||62, 381|
|RSP_2883||pgm||Probable phosphoglucomutase/phosphomannomutase (NCBI)||175, 384|
|RSP_2908||RSP_2908||hypothetical protein (NCBI)||110, 384|
|RSP_2909||RSP_2909||Hydrolase arginase family (NCBI)||110, 384|
|RSP_2942||RSP_2942||hypothetical protein (NCBI)||349, 381|
|RSP_3226||RSP_3226||Silent information regulator protein, Sir2 (NCBI)||99, 381|
|RSP_3246||RSP_3246||putative D-alanyl-D-alanine carboxypeptidase (NCBI)||175, 384|
|RSP_3376||aroQ||3 dehydroquinase dehydratase, class II (NCBI)||240, 381|
|RSP_3419||RSP_3419||hypothetical protein (NCBI)||175, 381|
|RSP_3507||RSP_3507||hypothetical protein (NCBI)||381, 384|
|RSP_3553||dnaE||DNA polymerase III alpha chain (NCBI)||291, 381|
|RSP_3665||RSP_3665||transcriptional regulator, LuxR family (NCBI)||214, 384|
|RSP_3728||RSP_3728||putative acyl carrier protein phosphodiesterase (NCBI)||354, 384|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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