Organism : Rhodobacter sphaeroides 2.4.1 | Module List :
Regulation information for RSP_1188(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Functional Enrichment for RSP_1188
Module neighborhood information for RSP_1188
|Gene||Common Name||Description||Module membership|
|RSP_0282||ppsR||Transcriptional regulator, PpsR (NCBI)||358, 381|
|RSP_0334||RSP_0334||hypothetical protein (NCBI)||59, 259|
|RSP_0384||RSP_0384||hypothetical protein (NCBI)||329, 381|
|RSP_0415||RSP_0415||sigma-24 (NCBI)||308, 381|
|RSP_0599||RSP_0599||Probable DNA/pantothenate metabolism flavoprotein (NCBI)||242, 381|
|RSP_0664||RSP_0664||hypothetical protein (NCBI)||59, 344|
|RSP_0708||RSP_0708||NUDIX hydrolase (NCBI)||242, 381|
|RSP_0710||dnaX||DNA polymerase III tau and gamma subunits (NCBI)||173, 381|
|RSP_0724||mscL||Large-conductance mechanosensitive channel (NCBI)||59, 234|
|RSP_0858||RSP_0858||Putative transporter, RhaT family, DMT superfamily (NCBI)||59, 88|
|RSP_1012||gabD4||succinate-semialdehyde dehdyrogenase (NCBI)||59, 344|
|RSP_1186||RSP_1186||hypothetical protein (NCBI)||59, 67|
|RSP_1187||RSP_1187||hypothetical protein (NCBI)||7, 59|
|RSP_1188||wcaG||Nucleotide sugar epimerase/dehydratase (NCBI)||59, 381|
|RSP_1214||RSP_1214||putative branched-chain amino acid aminotransferase (NCBI)||215, 381|
|RSP_1215||ilvE||putative IlvE, Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase (NCBI)||68, 381|
|RSP_1342||dnaA||chromosomal replication initiator protein, DnaA (NCBI)||25, 381|
|RSP_1404||RSP_1404||Orotidine 5'-phosphate decarboxylase (NCBI)||311, 381|
|RSP_1405||RSP_1405||ROK family protein (NCBI)||285, 381|
|RSP_1452||RSP_1452||ABC peptide/nickel/opine transporter, inner membrane subunit (NCBI)||17, 59|
|RSP_1505||RSP_1505||Putative Metallo-phosphoesterase (NCBI)||59, 344|
|RSP_1507||RSP_1507||Aldehyde dehydrogenase (NCBI)||59, 344|
|RSP_1520||prrB||Sensor histidine kinase PrrB (RegB) (NCBI)||16, 381|
|RSP_1553||RSP_1553||Probable glyoxylate induced protein (NCBI)||102, 381|
|RSP_1554||RSP_1554||Possible polysaccharide deacetylase (NCBI)||102, 381|
|RSP_1555||RSP_1555||Transthyretin-like protein (NCBI)||329, 381|
|RSP_1566||RSP_1566||hypothetical protein (NCBI)||176, 381|
|RSP_1621||RSP_1621||Deoxyguanosinetriphosphate triphosphohydrolase-like protein (NCBI)||93, 381|
|RSP_1894||RSP_1894||hypothetical protein (NCBI)||323, 381|
|RSP_1908||RSP_1908||outer membrane protein, OmpA/MotB family (NCBI)||72, 381|
|RSP_1909||RSP_1909||Outer membrane general secretion pathway protein, Secretin (NCBI)||221, 381|
|RSP_1946||RSP_1946||Cytochrome P450 hydroxylase (NCBI)||175, 381|
|RSP_2119||RSP_2119||hypothetical protein (NCBI)||10, 381|
|RSP_2155||hisD||Histidinol dehydrogenase (NCBI)||17, 59|
|RSP_2158||RSP_2158||ABC transporter, periplasmic solute-binding protein (NCBI)||57, 59|
|RSP_2159||RSP_2159||ABC transporter, ATPase subunit (NCBI)||59, 299|
|RSP_2334||pfkB||carbohydrate kinase, PfkB (NCBI)||59, 344|
|RSP_2496||RSP_2496||hypothetical protein (NCBI)||47, 59|
|RSP_2577||cycI||isocytochrome c2 (NCBI)||26, 59|
|RSP_2694||RSP_2694||hypothetical protein (NCBI)||357, 381|
|RSP_2844||RSP_2844||Putative GTP-binding protein (NCBI)||59, 114|
|RSP_2869||RSP_2869||Possible tellurite resistance protein (NCBI)||329, 381|
|RSP_2882||RSP_2882||two component transcriptional regulator, LuxR family (NCBI)||62, 381|
|RSP_2942||RSP_2942||hypothetical protein (NCBI)||349, 381|
|RSP_3226||RSP_3226||Silent information regulator protein, Sir2 (NCBI)||99, 381|
|RSP_3376||aroQ||3 dehydroquinase dehydratase, class II (NCBI)||240, 381|
|RSP_3401||RSP_3401||diguanylate cyclase (NCBI)||17, 59|
|RSP_3419||RSP_3419||hypothetical protein (NCBI)||175, 381|
|RSP_3507||RSP_3507||hypothetical protein (NCBI)||381, 384|
|RSP_3508||RSP_3508||predicted acetamidase/formamidase (NCBI)||59, 344|
|RSP_3538||RSP_3538||hypothetical protein (NCBI)||59, 344|
|RSP_3539||RSP_3539||Hemolysin-type calcium-binding region, RTX (NCBI)||59, 344|
|RSP_3540||RSP_3540||Putative adhesin or RTX toxin (NCBI)||59, 344|
|RSP_3553||dnaE||DNA polymerase III alpha chain (NCBI)||291, 381|
|RSP_3833||fadB||enoyl CoA hydratase (NCBI)||59, 278|
|RSP_3834||RSP_3834||hypothetical protein (NCBI)||59, 274|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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CircVisOur circular module explorer is adapted from visquick originally developed by Dick Kreisberg of Ilya Shmulevich lab at ISB for The Cancer Genome Atlas. We use simplified version of visquick to display distribution of module members and their interactions across the genome. This view provides summary of regulation information for a gene. The main components are;
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