Organism : Rhodobacter sphaeroides 2.4.1 | Module List :
Regulation information for RSP_1214(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Functional Enrichment for RSP_1214
Module neighborhood information for RSP_1214
|Gene||Common Name||Description||Module membership|
|RSP_0014||RSP_0014||transcriptional regulator, TetR family (NCBI)||91, 215|
|RSP_0282||ppsR||Transcriptional regulator, PpsR (NCBI)||358, 381|
|RSP_0337||RSP_0337||possible phospodiesterase (NCBI)||120, 215|
|RSP_0338||RSP_0338||hypothetical protein (NCBI)||120, 215|
|RSP_0363||RSP_0363||hypothetical protein (NCBI)||215, 218|
|RSP_0384||RSP_0384||hypothetical protein (NCBI)||329, 381|
|RSP_0415||RSP_0415||sigma-24 (NCBI)||308, 381|
|RSP_0586||RSP_0586||probable nicotinate-nucleotide adenylyltransferase (NCBI)||7, 215|
|RSP_0599||RSP_0599||Probable DNA/pantothenate metabolism flavoprotein (NCBI)||242, 381|
|RSP_0708||RSP_0708||NUDIX hydrolase (NCBI)||242, 381|
|RSP_0710||dnaX||DNA polymerase III tau and gamma subunits (NCBI)||173, 381|
|RSP_0782||RSP_0782||Ppx/GppA phosphatase (NCBI)||215, 240|
|RSP_0784||RSP_0784||putative acetyltransferase, GNAT family (NCBI)||215, 240|
|RSP_0814||RSP_0814||Acetyltransferase (NCBI)||215, 248|
|RSP_1188||wcaG||Nucleotide sugar epimerase/dehydratase (NCBI)||59, 381|
|RSP_1189||wcaJ||sugar transferase (NCBI)||47, 215|
|RSP_1190||RSP_1190||hypothetical protein (NCBI)||215, 368|
|RSP_1191||RSP_1191||transcriptional regulator, MarR family (NCBI)||215, 368|
|RSP_1214||RSP_1214||putative branched-chain amino acid aminotransferase (NCBI)||215, 381|
|RSP_1215||ilvE||putative IlvE, Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase (NCBI)||68, 381|
|RSP_1275||RSP_1275||Crp-Fnr family transciptional regulator (NCBI)||215, 340|
|RSP_1276||RSP_1276||hypothetical protein (NCBI)||215, 368|
|RSP_1287||RSP_1287||ABC branched chain amino acid family transporter, ATPase subunit (NCBI)||215, 263|
|RSP_1342||dnaA||chromosomal replication initiator protein, DnaA (NCBI)||25, 381|
|RSP_1369||RSP_1369||Short-chain dehydrogenase/reductase SDR (NCBI)||126, 215|
|RSP_1404||RSP_1404||Orotidine 5'-phosphate decarboxylase (NCBI)||311, 381|
|RSP_1405||RSP_1405||ROK family protein (NCBI)||285, 381|
|RSP_1511||RSP_1511||hypothetical protein (NCBI)||215, 372|
|RSP_1520||prrB||Sensor histidine kinase PrrB (RegB) (NCBI)||16, 381|
|RSP_1553||RSP_1553||Probable glyoxylate induced protein (NCBI)||102, 381|
|RSP_1554||RSP_1554||Possible polysaccharide deacetylase (NCBI)||102, 381|
|RSP_1555||RSP_1555||Transthyretin-like protein (NCBI)||329, 381|
|RSP_1566||RSP_1566||hypothetical protein (NCBI)||176, 381|
|RSP_1621||RSP_1621||Deoxyguanosinetriphosphate triphosphohydrolase-like protein (NCBI)||93, 381|
|RSP_1861||RSP_1861||probable dihydroneopterin aldolase (NCBI)||215, 326|
|RSP_1894||RSP_1894||hypothetical protein (NCBI)||323, 381|
|RSP_1908||RSP_1908||outer membrane protein, OmpA/MotB family (NCBI)||72, 381|
|RSP_1909||RSP_1909||Outer membrane general secretion pathway protein, Secretin (NCBI)||221, 381|
|RSP_1946||RSP_1946||Cytochrome P450 hydroxylase (NCBI)||175, 381|
|RSP_2119||RSP_2119||hypothetical protein (NCBI)||10, 381|
|RSP_2312||RSP_2312||hypothetical protein (NCBI)||215, 231|
|RSP_2375||RSP_2375||hypothetical protein (NCBI)||215, 366|
|RSP_2382||RSP_2382||hypothetical protein (NCBI)||215, 294|
|RSP_2391||RSP_2391||2'-5' RNA ligase (NCBI)||126, 215|
|RSP_2634||ccmH||Cytochrome c maturation protein, CcmH (NCBI)||215, 368|
|RSP_2678||RSP_2678||hypothetical protein (NCBI)||215, 340|
|RSP_2694||RSP_2694||hypothetical protein (NCBI)||357, 381|
|RSP_2788||RSP_2788||hypothetical protein (NCBI)||36, 215|
|RSP_2869||RSP_2869||Possible tellurite resistance protein (NCBI)||329, 381|
|RSP_2882||RSP_2882||two component transcriptional regulator, LuxR family (NCBI)||62, 381|
|RSP_2942||RSP_2942||hypothetical protein (NCBI)||349, 381|
|RSP_3023||RSP_3023||hypothetical protein (NCBI)||215, 303|
|RSP_3226||RSP_3226||Silent information regulator protein, Sir2 (NCBI)||99, 381|
|RSP_3376||aroQ||3 dehydroquinase dehydratase, class II (NCBI)||240, 381|
|RSP_3402||RSP_3402||multisensor diguanylate cyclase/phosphodiesterase (NCBI)||17, 215|
|RSP_3419||RSP_3419||hypothetical protein (NCBI)||175, 381|
|RSP_3507||RSP_3507||hypothetical protein (NCBI)||381, 384|
|RSP_3553||dnaE||DNA polymerase III alpha chain (NCBI)||291, 381|
|RSP_3564||RSP_3564||Generic methyltransferase (NCBI)||7, 215|
|RSP_3680||RSP_3680||transcriptional regulator, TetR family (NCBI)||143, 215|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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Identity of gene members in a module may help to identify potential interactions between different functional modules. Therefore, neighbor genes that share the same module(s) with gene under consideration are shown here. For each memebr, gene name, description and modules that contain it are listed.
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CircVisOur circular module explorer is adapted from visquick originally developed by Dick Kreisberg of Ilya Shmulevich lab at ISB for The Cancer Genome Atlas. We use simplified version of visquick to display distribution of module members and their interactions across the genome. This view provides summary of regulation information for a gene. The main components are;
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