Organism : Bacillus subtilis | Module List :
Regulation information for BSU22160(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for BSU22160
|Gene||Common Name||Description||Module membership|
|BSU00570||yabM||putative exporter (RefSeq)||66, 409|
|BSU00580||yabN||putative fusion methylase and nucleotide pyrophosphohydrolase (RefSeq)||66, 193|
|BSU02270||pssA||phosphatidylserine synthase (RefSeq)||66, 212|
|BSU05680||ydgK||putative efflux transporter (RefSeq)||14, 66|
|BSU06330||yeaC||hypothetical protein (RefSeq)||66, 142|
|BSU06340||yeaD||hypothetical protein (RefSeq)||66, 142|
|BSU06350||yebA||hypothetical protein (RefSeq)||67, 271|
|BSU06380||yebC||putative integral inner membrane protein (RefSeq)||14, 66|
|BSU06730||yefA||putative RNA methyltransferase (RefSeq)||67, 190|
|BSU06760||yeeA||putative restriction type II methylase (RefSeq)||67, 142|
|BSU07500||yfmE||iron-dicitrate ABC transporter (permease) (RefSeq)||66, 151|
|BSU07980||pdaA||exported N-acetylmuramic acid deacetylase (RefSeq)||66, 293|
|BSU08540||yfhI||putative efflux transporter (RefSeq)||67, 293|
|BSU09000||yhbJ||putative integral inner membrane protein; putative exporter subunit (RefSeq)||66, 225|
|BSU09020||yhcB||putative oxidoreductase associated to oxygen stress (RefSeq)||14, 66|
|BSU09470||yhdH||putative sodium-dependent transporter (RefSeq)||67, 154|
|BSU11310||comZ||putative late competence gene (RefSeq)||14, 67|
|BSU13090||ykkC||efflux transporter (RefSeq)||37, 66|
|BSU13100||ykkD||efflux transporter (RefSeq)||66, 293|
|BSU13110||purU||formyltetrahydrofolate deformylase (RefSeq)||14, 67|
|BSU13880||glcT||transcriptional antiterminator (BglG family) (RefSeq)||66, 283|
|BSU16580||polC||DNA polymerase III PolC (RefSeq)||37, 67|
|BSU19230||yocJ||azoreductase (RefSeq)||66, 164|
|BSU19530||yodA||putative tautomerase (RefSeq)||66, 322|
|BSU20040||nrdF||ribonucleotide-diphosphate reductase subunit beta (NCBI)||66, 102|
|BSU21710||dinF||damage inducible, Na+ driven multidrug efflux pump (RefSeq)||67, 170|
|BSU21730||ypmS||hypothetical protein (RefSeq)||66, 370|
|BSU22160||yptA||hypothetical protein (RefSeq)||66, 67|
|BSU22310||recU||Holliday junction-specific endonuclease (RefSeq)||67, 265|
|BSU22320||ponA||peptidoglycan glycosyltransferase (penicillin-binding proteins 1A and 1B) (RefSeq)||67, 292|
|BSU22330||ypoC||hypothetical protein (RefSeq)||67, 199|
|BSU22340||nth||endonuclease III (RefSeq)||67, 293|
|BSU22350||dnaD||DNA-remodelling primosomal protein (RefSeq)||67, 293|
|BSU23200||ypuI||hypothetical protein (RefSeq)||67, 322|
|BSU23600||yqxK||hypothetical protein (RefSeq)||66, 292|
|BSU23800||proI||pyrroline-5-carboxylate reductase (RefSeq)||66, 409|
|BSU23950||yqjA||hypothetical protein (RefSeq)||67, 319|
|BSU26700||azlD||branched-chain amino acid transporter (RefSeq)||67, 339|
|BSU26710||azlC||branched-chain amino acid transporter (RefSeq)||67, 339|
|BSU26720||azlB||transcriptional regulator (Lrp/AsnC family) (RefSeq)||67, 339|
|BSU27090||aapA||d-Serine/d-alanine/glycine permease (RefSeq)||38, 66|
|BSU27210||yrhF||hypothetical protein (RefSeq)||14, 66|
|BSU29970||ytkP||putative cysteine synthase-like protein (RefSeq)||66, 151|
|BSU31130||yubD||putative efflux transporter (RefSeq)||66, 216|
|BSU31400||alaT||hypothetical protein (RefSeq)||67, 132|
|BSU31410||yugG||putative transcriptional regulator (Lrp/AsnC family) (RefSeq)||67, 293|
|BSU32180||yutK||putative Na+(H+)/nucleoside cotransporter (RefSeq)||50, 67|
|BSU32880||yusP||putative multidrug-efflux transporter (RefSeq)||14, 67|
|BSU33100||liaF||integral inner membrane protein (RefSeq)||66, 319|
|BSU33990||yvbU||putative transcriptional regulator (LysR family) (RefSeq)||14, 66|
|BSU35690||ggaA||poly(glucosyl N-acetylgalactosamine 1-phosphate) glucosyltransferase (RefSeq)||67, 402|
|BSU36590||clsA||cardiolipin synthase (RefSeq)||66, 226|
|BSU36990||ywkF||hypothetical protein (RefSeq)||14, 66|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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Network inference algorithm uses de novo motif prediction for assigning genes to modules. If there are any motifs identified in the upstream region of a gene, the motif will be shown here. For each motif sequence logo, consensus and e-value will be shown.
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