Organism : Bacillus subtilis | Module List :
Regulation information for BSU26110(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for BSU26110
|Gene||Common Name||Description||Module membership|
|BSU02160||ybfA||hypothetical protein (RefSeq)||175, 358|
|BSU02300||ybfN||hypothetical protein (RefSeq)||75, 294|
|BSU02480||gudP||glucarate transporter (RefSeq)||10, 175|
|BSU02850||adcA||Zn(II)-binding lipoprotein (RefSeq)||294, 395|
|BSU03890||gabR||transcriptional regulator (GntR/MocR family) with PLP binding site (RefSeq)||175, 360|
|BSU05310||ydeR||putative efflux transporter (RefSeq)||175, 305|
|BSU05360||ydfC||putative permease (RefSeq)||88, 175|
|BSU05430||ydfJ||putative proton metabolite efflux transporter (RefSeq)||175, 305|
|BSU05510||ydfQ||putative thioredoxin or thiol-disulfide isomerase (RefSeq)||95, 294|
|BSU05560||ydgA||hypothetical protein (RefSeq)||175, 358|
|BSU05690||ydhB||putative integral inner membrane protein (RefSeq)||270, 294|
|BSU06220||ydjJ||putative membrane associated potassium channel (RefSeq)||175, 364|
|BSU06370||pbuG||hypoxanthine/guanine permease (RefSeq)||190, 294|
|BSU06660||opuE||proline transporter (RefSeq)||142, 294|
|BSU07180||yetI||hypothetical protein (RefSeq)||154, 294|
|BSU07250||yetO||putative cytochrome P450 CYP102A2 (RefSeq)||175, 387|
|BSU07720||yflD||hypothetical protein (RefSeq)||95, 294|
|BSU07910||yfkF||putative efflux transporter (RefSeq)||175, 387|
|BSU08330||yfiN||putative ABC transporter (permease) (RefSeq)||175, 371|
|BSU09480||yhdI||putative PLP-dependent transcriptional regulator (RefSeq)||95, 294|
|BSU09740||yheF||hypothetical protein; orphan (RefSeq)||39, 175|
|BSU10580||yhjO||hypothetical protein (RefSeq)||175, 371|
|BSU10970||yitF||putative enolase superfamily enzyme (RefSeq)||175, 326|
|BSU11260||yjzC||hypothetical protein (RefSeq)||175, 282|
|BSU13050||ykzH||hypothetical protein (RefSeq)||88, 175|
|BSU13440||ykoY||putative transporter (RefSeq)||178, 294|
|BSU17290||ebrB||small multidrug efflux transporter (RefSeq)||38, 294|
|BSU17310||ymaG||putative cell wall associated protein (RefSeq)||294, 358|
|BSU17450||glnR||transcriptional regulator (nitrogen metabolism) (RefSeq)||30, 294|
|BSU17880||ynzC||hypothetical protein (RefSeq)||244, 294|
|BSU18060||yneR||hypothetical protein (RefSeq)||20, 294|
|BSU23930||yqjC||putative lyase (RefSeq)||175, 387|
|BSU25010||yqgE||putative efflux transporter (RefSeq)||174, 294|
|BSU26100||yqbI||conserved hypothetical protein; skin element (RefSeq)||130, 175|
|BSU26110||yqbH||conserved hypothetical protein; skin element (RefSeq)||175, 294|
|BSU28320||ysnD||hypothetical protein (RefSeq)||108, 294|
|BSU33550||yvaC||putative integral inner membrane protein (RefSeq)||175, 358|
|BSU34400||padC||phenolic acid decarboxylase (RefSeq)||95, 294|
|BSU36140||ywqO||hypothetical protein (RefSeq)||84, 175|
|BSU37200||uvsE||putative UV damage endonuclease (RefSeq)||26, 294|
|BSU39970||yxaH||putative integral inner membrane protein (RefSeq)||142, 175|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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If the gene is a member of a module, regulators influencing that module are also considered to regulate the gene. Regulators table list total number of regulatory influences, regulators, modules and type of the influence.
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Identity of gene members in a module may help to identify potential interactions between different functional modules. Therefore, neighbor genes that share the same module(s) with gene under consideration are shown here. For each memebr, gene name, description and modules that contain it are listed.
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- 1. All genomic elements for the organism are represented as a circle and each element is separated by black tick marks. In this example chromosome and pDV represent main chromosome and plasmid for D. vulgaris Hildenborough, respectively.
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