Organism : Bacillus subtilis | Module List :
Regulation information for BSU09500(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for BSU09500
|Gene||Common Name||Description||Module membership|
|BSU01750||ybbP||hypothetical protein (RefSeq)||38, 265|
|BSU04290||ydaL||hypothetical protein (RefSeq)||44, 213|
|BSU04310||ydaN||putative regulator (RefSeq)||44, 213|
|BSU04320||ydaO||putative metabolite transporter (RefSeq)||38, 270|
|BSU05040||yddN||putative alkanal monooxygenase (RefSeq)||44, 95|
|BSU05080||yddR||putative metal-dependent hydrolase (RefSeq)||38, 255|
|BSU05090||yddS||putative permease (RefSeq)||38, 115|
|BSU05340||ydfA||putative metal-anion antiporter protein (RefSeq)||14, 38|
|BSU05640||ydgG||putative transcriptional regulator (MarR family) (RefSeq)||38, 178|
|BSU05650||ydgH||putative membrane component (RefSeq)||38, 178|
|BSU07700||nagP||phosphotransferase system (PTS) N-acetylglucosamine-specific enzyme IICB component (RefSeq)||38, 365|
|BSU09460||ctrA||branched-chain amino acid transporter (RefSeq)||38, 311|
|BSU09500||yhdK||negative regulator of the activity of sigma-M (RefSeq)||38, 44|
|BSU09510||yhdL||negative regulator of the activity of sigma-M (RefSeq)||38, 170|
|BSU09520||sigM||RNA polymerase sigma factor SigM (RefSeq)||38, 193|
|BSU13430||ykoX||putative integral inner membrane protein (RefSeq)||38, 89|
|BSU13770||ykvO||putative oxidoreductase (RefSeq)||44, 216|
|BSU13790||ykvQ||putative sporulation-specific glycosylase (RefSeq)||44, 291|
|BSU17290||ebrB||small multidrug efflux transporter (RefSeq)||38, 294|
|BSU17300||ebrA||small multidrug resistance efflux transporter (RefSeq)||38, 44|
|BSU17410||cwlC||N-acetylmuramoyl-L-alanine amidase (RefSeq)||44, 283|
|BSU17670||cotU||spore coat protein (RefSeq)||44, 200|
|BSU17770||yndF||putative spore germination lipoprotein (RefSeq)||44, 301|
|BSU18110||ynfC||hypothetical protein (RefSeq)||44, 94|
|BSU18180||yngB||putative UTP-sugar-phosphate uridylyltransferase (RefSeq)||44, 52|
|BSU18740||yozG||putative transcriptional regulator (RefSeq)||44, 47|
|BSU20710||yopZ||conserved hypothetical protein; phage SPbeta (RefSeq)||44, 52|
|BSU24200||yqiH||putative lipoprotein (RefSeq)||44, 52|
|BSU25900||cwlA||N-acetylmuramoyl-L-alanine amidase; skin element (RefSeq)||44, 206|
|BSU25910||yqxH||putative holin; skin element (RefSeq)||44, 206|
|BSU26410||yrkR||phosphate-starvation-inducible protein PsiE (RefSeq)||44, 129|
|BSU26430||yrkP||two-component response regulator [YrkQ] (RefSeq)||44, 129|
|BSU26440||yrkO||putative integral inner membrane protein (RefSeq)||44, 129|
|BSU26490||yrkJ||putative integral inner membrane protein (RefSeq)||44, 71|
|BSU26500||yrkI||hypothetical protein (RefSeq)||44, 71|
|BSU26510||yrkH||putative hydrolase (RefSeq)||44, 71|
|BSU26530||yrkF||putative rhodanese-related sulfur transferase (RefSeq)||44, 71|
|BSU26670||gltR||transcriptional regulator (LysR family) (RefSeq)||38, 270|
|BSU26690||brnQ||low-affinity branched-chain amino acid transporter (RefSeq)||38, 327|
|BSU26770||yrdB||putative integral inner membrane protein (RefSeq)||38, 327|
|BSU26840||sigZ||RNA polymerase sigma factor SigZ (RefSeq)||44, 206|
|BSU27090||aapA||d-Serine/d-alanine/glycine permease (RefSeq)||38, 66|
|BSU27140||oatA||peptidoglycan O-acetyltransferase (RefSeq)||38, 270|
|BSU27150||yrhK||hypothetical protein (RefSeq)||44, 387|
|BSU35040||yvnB||putative exported phosphohydrolase (RefSeq)||44, 238|
|BSU35200||yvkB||putative transcriptional regulator (TetR/AcrR family) (RefSeq)||38, 132|
|BSU35210||yvkA||putative efflux transporter (RefSeq)||38, 409|
|BSU35870||pgsE||factor required for polyglutamate synthesis (RefSeq)||44, 61|
|BSU37990||ywdE||putative integral inner membrane protein (RefSeq)||38, 111|
|BSU38000||ywdD||putative integral inner membrane protein (RefSeq)||38, 111|
|BSU38120||rodA||factor involved in extension of the lateral walls of the cell (RefSeq)||38, 409|
|BSU38390||ywbA||putative phosphotransferase system enzyme IIC permease component (RefSeq)||44, 130|
|BSU38890||yxjN||putative integral inner membrane protein (RefSeq)||38, 233|
|BSU39990||yxaF||transcriptional regulator (RefSeq)||38, 270|
|BSU40240||yycS||putative integrase/transposase (RefSeq)||44, 285|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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