Organism : Bacillus subtilis | Module List :
Regulation information for VIMSS37650(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for VIMSS37650
|Gene||Common Name||Description||Module membership|
|BSU03290||nasE||assimilatory nitrite reductase subunit (RefSeq)||189, 405|
|BSU03300||nasD||assimilatory nitrite reductase subunit (RefSeq)||189, 405|
|BSU04240||ydzA||hypothetical protein (RefSeq)||22, 189|
|BSU04330||mutT||putative NTP pyrophosphohydrolase (RefSeq)||164, 341|
|BSU04510||ydbL||hypothetical protein (RefSeq)||189, 233|
|BSU06390||yebD||hypothetical protein (RefSeq)||189, 295|
|BSU06560||yerA||putative amidohydrolase (RefSeq)||131, 189|
|BSU10120||hemE||uroporphyrinogen decarboxylase (RefSeq)||188, 189|
|BSU10130||hemH||ferrochelatase (RefSeq)||188, 189|
|BSU10140||hemY||protoporphyrinogen oxidase (RefSeq)||188, 189|
|BSU10820||yisQ||putative Na+driven efflux transporter (RefSeq)||50, 164|
|BSU10830||yisR||putative transcriptional regulator (AraC/XylS family) (RefSeq)||50, 164|
|BSU10840||degA||transcriptional regulator (LacI family) (RefSeq)||50, 164|
|BSU12080||ctaO||protoheme IX farnesyltransferase (heme O synthase) (RefSeq)||96, 189|
|BSU14380||fruR||transcriptional regulator (DeoR family) (RefSeq)||22, 164|
|BSU14390||fruK||fructose-1-phosphate kinase (RefSeq)||22, 164|
|BSU14400||fruA||phosphotransferase system (PTS) fructose-specific enzyme IIABC component (RefSeq)||50, 164|
|BSU14870||ctaA||heme-A synthase (RefSeq)||51, 189|
|BSU15850||sdaAB||L-serine dehydratase (beta chain) (RefSeq)||164, 228|
|BSU15860||sdaAA||L-serine dehydratase (alpha chain) (RefSeq)||164, 228|
|BSU15870||recG||ATP-dependent DNA helicase RecG (RefSeq)||164, 228|
|BSU17010||ymcB||(dimethylallyl)adenosine tRNA methylthiotransferase (RefSeq)||22, 164|
|BSU18170||yngA||putative conserved membrane protein (RefSeq)||168, 189|
|BSU19230||yocJ||azoreductase (RefSeq)||66, 164|
|BSU21850||ypiP||putative methyltransferase (RefSeq)||164, 179|
|BSU23110||resE||two-component sensor histidine kinase (RefSeq)||189, 340|
|BSU23120||resD||two-component response regulator (RefSeq)||189, 340|
|BSU26890||csn||chitosanase (RefSeq)||189, 208|
|BSU32170||dapF||diaminopimelate epimerase (RefSeq)||164, 258|
|BSU33370||yvgK||putative molybdate binding regulator (RefSeq)||164, 258|
|BSU35270||cccB||cytochrome c551 (RefSeq)||189, 315|
|BSU37310||fnr||transcriptional regulator (FNR/CAP family) (RefSeq)||22, 189|
|BSU37350||sboA||subtilosin A (RefSeq)||26, 189|
|BSU37360||sboX||putative bacteriocin-like product (RefSeq)||189, 201|
|BSU37370||albA||putative antilisterial bacteriocin (subtilosin) production enzyme (RefSeq)||189, 241|
|BSU37380||albB||putative membrane component involved in subtilosin production (RefSeq)||189, 241|
|BSU38650||yxlG||putative ABC-transporter (permease) (RefSeq)||54, 164|
|BSU38660||yxlF||putative ABC transporter component (ATP-binding protein) (RefSeq)||52, 164|
|BSU38670||yxlE||negative regulator of sigma-Y activity (RefSeq)||54, 164|
|BSU38680||yxlD||putative sigma-Y antisigma factor component (RefSeq)||54, 164|
|BSU38690||yxlC||sigma-Y antisigma factor (RefSeq)||54, 164|
|BSU38700||sigY||RNA polymerase sigma factor SigY (RefSeq)||54, 164|
|BSU38730||cydD||ABC membrane transporter (ATP-binding protein) required for cytochrome bd function (RefSeq)||189, 349|
|BSU38740||cydC||ABC membrane transporter (ATP-binding protein) required for cytochrome bd function (RefSeq)||189, 349|
|BSU38750||cydB||cytochrome bd ubiquinol oxidase (subunit II) (RefSeq)||189, 349|
|BSU38760||cydA||cytochrome bd ubiquinol oxidase (subunit I) (RefSeq)||178, 189|
|BSU39400||pdp||pyrimidine-nucleoside phosphorylase (RefSeq)||22, 164|
|BSU39410||nupC||pyrimidine-nucleoside Na+(H+) cotransporter (RefSeq)||4, 164|
|BSU39940||yxaL||membrane associated protein kinase with beta-propeller domain (RefSeq)||189, 276|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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