Organism : Bacillus subtilis | Module List :
Regulation information for VIMSS37717(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for VIMSS37717
|Gene||Common Name||Description||Module membership|
|BSU00010||dnaA||chromosomal replication initiation protein (RefSeq)||34, 97|
|BSU00020||dnaN||DNA polymerase III subunit beta (RefSeq)||34, 204|
|BSU00030||yaaA||putative RNA binding protein (RefSeq)||34, 221|
|BSU00040||recF||recombination protein F (RefSeq)||34, 221|
|BSU00060||gyrB||DNA gyrase subunit B (RefSeq)||34, 221|
|BSU00070||gyrA||DNA gyrase subunit A (RefSeq)||34, 221|
|BSU04330||mutT||putative NTP pyrophosphohydrolase (RefSeq)||164, 341|
|BSU10820||yisQ||putative Na+driven efflux transporter (RefSeq)||50, 164|
|BSU10830||yisR||putative transcriptional regulator (AraC/XylS family) (RefSeq)||50, 164|
|BSU10840||degA||transcriptional regulator (LacI family) (RefSeq)||50, 164|
|BSU14380||fruR||transcriptional regulator (DeoR family) (RefSeq)||22, 164|
|BSU14390||fruK||fructose-1-phosphate kinase (RefSeq)||22, 164|
|BSU14400||fruA||phosphotransferase system (PTS) fructose-specific enzyme IIABC component (RefSeq)||50, 164|
|BSU15850||sdaAB||L-serine dehydratase (beta chain) (RefSeq)||164, 228|
|BSU15860||sdaAA||L-serine dehydratase (alpha chain) (RefSeq)||164, 228|
|BSU15870||recG||ATP-dependent DNA helicase RecG (RefSeq)||164, 228|
|BSU16590||ylxS||hypothetical protein (RefSeq)||34, 374|
|BSU16600||nusA||transcription elongation factor NusA (RefSeq)||34, 122|
|BSU16610||ylxR||putative RNA binding protein; putative new fold (RefSeq)||34, 122|
|BSU16620||ylxQ||hypothetical protein (RefSeq)||34, 122|
|BSU16630||infB||translation initiation factor IF-2 (RefSeq)||34, 122|
|BSU17010||ymcB||(dimethylallyl)adenosine tRNA methylthiotransferase (RefSeq)||22, 164|
|BSU19230||yocJ||azoreductase (RefSeq)||66, 164|
|BSU21850||ypiP||putative methyltransferase (RefSeq)||164, 179|
|BSU25430||rimO||ribosomal protein S12 methylthiotransferase (RefSeq)||34, 122|
|BSU25440||yqeU||16S ribosomal RNA methyltransferase RsmE (RefSeq)||34, 122|
|BSU25450||prmA||ribosomal protein L11 methyltransferase (RefSeq)||34, 122|
|BSU25460||dnaJ||chaperone protein DnaJ (RefSeq)||34, 122|
|BSU25500||hemN||coproporphyrinogen III oxidase (RefSeq)||34, 204|
|BSU32170||dapF||diaminopimelate epimerase (RefSeq)||164, 258|
|BSU33370||yvgK||putative molybdate binding regulator (RefSeq)||164, 258|
|BSU38650||yxlG||putative ABC-transporter (permease) (RefSeq)||54, 164|
|BSU38660||yxlF||putative ABC transporter component (ATP-binding protein) (RefSeq)||52, 164|
|BSU38670||yxlE||negative regulator of sigma-Y activity (RefSeq)||54, 164|
|BSU38680||yxlD||putative sigma-Y antisigma factor component (RefSeq)||54, 164|
|BSU38690||yxlC||sigma-Y antisigma factor (RefSeq)||54, 164|
|BSU38700||sigY||RNA polymerase sigma factor SigY (RefSeq)||54, 164|
|BSU39400||pdp||pyrimidine-nucleoside phosphorylase (RefSeq)||22, 164|
|BSU39410||nupC||pyrimidine-nucleoside Na+(H+) cotransporter (RefSeq)||4, 164|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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