Organism : Bacillus subtilis | Module List :
Regulation information for VIMSS39516(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for VIMSS39516
|Gene||Common Name||Description||Module membership|
|BSU02010||ybdK||two-component sensor histidine kinase [YbdJ] (RefSeq)||98, 394|
|BSU03370||yckA||putative ABC transporter (permease) (RefSeq)||98, 266|
|BSU03380||yckB||putative ABC transporter (binding lipoprotein) (RefSeq)||98, 266|
|BSU06830||rapH||response regulator aspartate phosphatase (RefSeq)||98, 394|
|BSU10420||comK||competence transcription factor (CTF) (RefSeq)||98, 394|
|BSU11620||yjbO||pseudouridylate synthase (RefSeq)||155, 187|
|BSU12230||hemD||uroporphyrinogen-III synthase (RefSeq)||187, 252|
|BSU14850||ftsW||cell-division protein (RefSeq)||187, 193|
|BSU16060||rnhB||ribonuclease HII (RefSeq)||7, 187|
|BSU16070||ylqG||putative glycosyltransferase (RefSeq)||7, 187|
|BSU16110||dprA||DNA processing Smf single strand binding protein (RefSeq)||96, 98|
|BSU16940||recA||recombinase A (RefSeq)||7, 98|
|BSU18300||ppsE||plipastatin synthetase (RefSeq)||98, 150|
|BSU18310||ppsD||plipastatin synthetase (RefSeq)||98, 306|
|BSU22460||ypjH||putative enzyme in leucine catabolism or biotin metabolism (RefSeq)||187, 382|
|BSU22470||ypjG||hypothetical protein (RefSeq)||187, 382|
|BSU22600||aroE||3-phosphoshikimate 1-carboxyvinyltransferase (RefSeq)||187, 385|
|BSU22610||tyrA||prephenate dehydrogenase (RefSeq)||107, 187|
|BSU22760||hepS||heptaprenyl diphosphate synthase component I (RefSeq)||15, 187|
|BSU22870||fni||isopentenyl pyrophosphate isomerase (RefSeq)||187, 193|
|BSU24870||glpG||membrane endopeptidase (RefSeq)||187, 252|
|BSU25030||yqgC||putative integral inner membrane protein (RefSeq)||187, 377|
|BSU25570||comEC||DNA channel for uptake in competent cells (RefSeq)||98, 394|
|BSU25580||comEB||putative enzyme associated to DNA transport (competence) (RefSeq)||98, 394|
|BSU27630||yrvD||hypothetical protein (RefSeq)||63, 187|
|BSU28040||radC||DNA repair protein RadC (RefSeq)||98, 266|
|BSU28050||maf||Maf-like protein (RefSeq)||98, 266|
|BSU28070||comC||membrane protease and transmethylase (RefSeq)||98, 394|
|BSU28350||ysnB||phosphoesterase (RefSeq)||187, 243|
|BSU28360||ysnA||nucleoside-triphosphatase (RefSeq)||187, 243|
|BSU28370||rph||ribonuclease PH (RefSeq)||155, 187|
|BSU29460||moaB||molybdopterin GTP-binding precursor Z biosynthesis component (RefSeq)||187, 243|
|BSU32200||yutJ||putative NADH dehydrogenase (RefSeq)||187, 245|
|BSU35450||comFC||putative component of the DNA transport apparatus (RefSeq)||98, 394|
|BSU35460||comFB||hypothetical protein (RefSeq)||98, 394|
|BSU36260||ywqC||modulator of YwqD protein tyrosine kinase activity (RefSeq)||187, 197|
|BSU37630||ywfM||putative transporter (RefSeq)||98, 241|
|BSU38410||sacX||negative regulator of SacY (RefSeq)||98, 291|
|BSU38850||yxkC||hypothetical protein (RefSeq)||7, 98|
|BSU40830||yyaK||putative integral inner membrane protein (RefSeq)||187, 255|
|BSU40920||yyaF||GTP-dependent nucleic acid-binding protein EngD (RefSeq)||98, 266|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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