Organism : Clostridium acetobutylicum | Module List :
Regulation information for CAC3357(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for CAC3357
|Gene||Common Name||Description||Module membership|
|CAC0193||CAC0193||Uncharacterized conserved membrane protein, affecting LPS biosynthesis (NCBI ptt file)||7, 174|
|CAC0194||CAC0194||Glycosyltransferase involved in cell wall biogenesis (NCBI ptt file)||7, 174|
|CAC0444||napA||Na/H antiporter (napA) (NCBI ptt file)||62, 174|
|CAC0467||CAC0467||Uncharacterized membrane protein, homolog of YDAH B.subtilis (NCBI ptt file)||78, 174|
|CAC0492||CAC0492||Alanine racemase (NCBI ptt file)||174, 318|
|CAC0609||CAC0609||Cyclic beta 1-2 glucan synthetase (NCBI ptt file)||118, 188|
|CAC0668||CAC0668||Predicted membrane protein (NCBI ptt file)||174, 305|
|CAC0678||CAC0678||CBS domains (NCBI ptt file)||160, 174|
|CAC0686||CAC0686||Spore cortex-lytic enzyme prepeptide; peptodoglycan-binding domain (NCBI ptt file)||118, 341|
|CAC0704||CAC0704||Sugar ABC transporter, permease protein (NCBI ptt file)||95, 174|
|CAC0769||CAC0769||Uncharacterized conserved protein (NCBI ptt file)||118, 314|
|CAC0840||potA||Spermidine/putrescine ABC transporter, ATP-binding component (NCBI ptt file)||153, 174|
|CAC0868||CAC0868||Predicted membrane protein (NCBI ptt file)||118, 304|
|CAC1423||CAC1423||Predicted dehydrogenase of short-chain alcohol dehydrogenase family, ortholog of YHDF B.subtilis (NCBI ptt file)||118, 300|
|CAC1468||CAC1468||Predicted acetyltransferase (NCBI ptt file)||174, 315|
|CAC1486||CAC1486||Uncharacterized protein, ortholog of YKUS B.subtilis (NCBI ptt file)||118, 367|
|CAC1520||CAC1520||Hypothetical protein (NCBI ptt file)||118, 279|
|CAC1588||CAC1588||Malolactic regulator, LysR family (NCBI ptt file)||174, 366|
|CAC1653||CAC1653||Predicted glycosyltransferases involved in cell wall biogenesis (NCBI ptt file)||73, 118|
|CAC1696||sigG||Specialized DNA-dependent RNA polymerase sigma subunit (NCBI ptt file)||174, 235|
|CAC1706||CAC1706||Phosphate permease (NCBI ptt file)||118, 245|
|CAC1707||CAC1707||Permease component of ATP-dependent phosphate uptake system (NCBI ptt file)||118, 245|
|CAC1968||CAC1968||Pectate lyase related enzyme (NCBI ptt file)||174, 314|
|CAC2303||CAC2303||Stage V sporulation AE, SpoVAE (fragment) (NCBI ptt file)||22, 118|
|CAC2305||SpoVAC||Stage V sporulation AC, SpoVAC (NCBI ptt file)||110, 118|
|CAC2438||CAC2438||Predicted phosphatase (NCBI ptt file)||174, 300|
|CAC2875||tagO||Undecaprenyl-phosphate (NCBI ptt file)||174, 235|
|CAC2981||CAC2981||Mannose-1-phosphate guanyltransferase (pyrophosphorylase domain and phosphomannomutase domain) (NCBI ptt file)||118, 123|
|CAC3016||CAC3016||Uncharacterized conserved membrane protein (NCBI ptt file)||95, 118|
|CAC3032||CAC3032||Galactose mutarotase related enzyme (NCBI ptt file)||174, 315|
|CAC3077||CAC3077||Uncharacterized FAD-dependent dehydrogenase (NCBI ptt file)||118, 142|
|CAC3213||CAC3213||Possible stage V sporulation protein B, predicted transporter (NCBI ptt file)||86, 118|
|CAC3220||CAC3220||Response regulator (CheY-like receiver domain and HTH-type DNA-binding domain) (NCBI ptt file)||44, 174|
|CAC3230||CAC3230||Hydrogenase subunit (ferredoxin) (NCBI ptt file)||174, 330|
|CAC3245||CAC3245||Subtilisin like protease (two fused domains) (NCBI ptt file)||118, 330|
|CAC3357||CAC3357||Hypothetical protein (NCBI ptt file)||118, 174|
|CAC3402||CAC3402||Dipeptidyl aminopeptidase/acylaminoacyl-peptidase related protein (NCBI ptt file)||118, 317|
|CAC3403||CAC3403||Predicted membrane protein (NCBI ptt file)||118, 317|
|CAC3590||CAC3590||Predicted flavoprotein, YhiN family (NCBI ptt file)||174, 301|
|CAC3684||CAC3684||Polygalacturonase (NCBI ptt file)||22, 118|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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