Organism : Clostridium acetobutylicum | Module List :
Regulation information for CAC0868(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for CAC0868
|Gene||Common Name||Description||Module membership|
|CAC0128||CAC0128||Hypothetical protein (NCBI ptt file)||281, 304|
|CAC0129||bofA||BofA B.subtilis ortholog, SigmaK-factor processing regulatory protein (NCBI ptt file)||77, 304|
|CAC0228||CAC0228||Hypothetical protein (NCBI ptt file)||304, 322|
|CAC0546||CAC0546||Uncharacterized membrane protein, homolog of Methanobacterium (2621593) (NCBI ptt file)||95, 304|
|CAC0609||CAC0609||Cyclic beta 1-2 glucan synthetase (NCBI ptt file)||118, 188|
|CAC0686||CAC0686||Spore cortex-lytic enzyme prepeptide; peptodoglycan-binding domain (NCBI ptt file)||118, 341|
|CAC0716||smpB||TmRNA-binding protein SmpB (NCBI ptt file)||53, 304|
|CAC0730||CAC0730||Predicted permease (NCBI ptt file)||146, 304|
|CAC0769||CAC0769||Uncharacterized conserved protein (NCBI ptt file)||118, 314|
|CAC0771||CAC0771||Cobalamin biosynthesis protein CbiM (NCBI ptt file)||262, 304|
|CAC0868||CAC0868||Predicted membrane protein (NCBI ptt file)||118, 304|
|CAC1065||CAC1065||Uncharacterized protein, related stage III sporulation protein AH of Bacillus sp. (NCBI ptt file)||59, 304|
|CAC1274||rpsT||Ribosomal protein S20 (NCBI ptt file)||281, 304|
|CAC1334||CAC1334||Fe-S oxidoreductase of MoeA/NarA subfamily (NCBI ptt file)||214, 304|
|CAC1423||CAC1423||Predicted dehydrogenase of short-chain alcohol dehydrogenase family, ortholog of YHDF B.subtilis (NCBI ptt file)||118, 300|
|CAC1486||CAC1486||Uncharacterized protein, ortholog of YKUS B.subtilis (NCBI ptt file)||118, 367|
|CAC1520||CAC1520||Hypothetical protein (NCBI ptt file)||118, 279|
|CAC1653||CAC1653||Predicted glycosyltransferases involved in cell wall biogenesis (NCBI ptt file)||73, 118|
|CAC1706||CAC1706||Phosphate permease (NCBI ptt file)||118, 245|
|CAC1707||CAC1707||Permease component of ATP-dependent phosphate uptake system (NCBI ptt file)||118, 245|
|CAC1740||CAC1740||Uncharcaterized membrane protein, YLBJ B.subtilis homolog (NCBI ptt file)||59, 304|
|CAC2110||CAC2110||GAF domain-containing protein (NCBI ptt file)||233, 304|
|CAC2299||hflX||Predicted GTPase, HflX (NCBI ptt file)||35, 304|
|CAC2303||CAC2303||Stage V sporulation AE, SpoVAE (fragment) (NCBI ptt file)||22, 118|
|CAC2305||SpoVAC||Stage V sporulation AC, SpoVAC (NCBI ptt file)||110, 118|
|CAC2476||CAC2476||Uncharacterized protein, homolog of Spirochaeta aurantia (gi:152901) (NCBI ptt file)||38, 304|
|CAC2477||CAC2477||Hypothetical protein (NCBI ptt file)||38, 304|
|CAC2641||tig||FKBP-type peptidyl-prolyl cis-transisomerase (trigger factor) (NCBI ptt file)||304, 329|
|CAC2864||atpC||FoF1-type ATP synthase epsilon subunit (NCBI ptt file)||304, 335|
|CAC2865||atpD||FoF1-type ATP synthase beta subunit (NCBI ptt file)||59, 304|
|CAC2870||atpE||FoF1-type ATP synthase C subunit (NCBI ptt file)||59, 304|
|CAC2888||rpmE||50S ribosomal protein L31 (NCBI ptt file)||38, 304|
|CAC2981||CAC2981||Mannose-1-phosphate guanyltransferase (pyrophosphorylase domain and phosphomannomutase domain) (NCBI ptt file)||118, 123|
|CAC3016||CAC3016||Uncharacterized conserved membrane protein (NCBI ptt file)||95, 118|
|CAC3038||ileS||Isoleucyl-tRNA synthetase (NCBI ptt file)||146, 304|
|CAC3077||CAC3077||Uncharacterized FAD-dependent dehydrogenase (NCBI ptt file)||118, 142|
|CAC3104||rpoA||DNA-dependent RNA polymerase alpha subunit (NCBI ptt file)||8, 304|
|CAC3113||seqY||Preprotein translocase subunit SecY (NCBI ptt file)||292, 304|
|CAC3122||rplX||Ribosomal protein L24 (NCBI ptt file)||255, 304|
|CAC3213||CAC3213||Possible stage V sporulation protein B, predicted transporter (NCBI ptt file)||86, 118|
|CAC3245||CAC3245||Subtilisin like protease (two fused domains) (NCBI ptt file)||118, 330|
|CAC3357||CAC3357||Hypothetical protein (NCBI ptt file)||118, 174|
|CAC3402||CAC3402||Dipeptidyl aminopeptidase/acylaminoacyl-peptidase related protein (NCBI ptt file)||118, 317|
|CAC3403||CAC3403||Predicted membrane protein (NCBI ptt file)||118, 317|
|CAC3647||abrB||Transition state regulatory protein AbrB (NCBI ptt file)||281, 304|
|CAC3684||CAC3684||Polygalacturonase (NCBI ptt file)||22, 118|
|CAC3700||CAC3700||Hypothetical protein, CF-44 family (NCBI ptt file)||162, 304|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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