12061 Lactamase_B superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
12061 chr_23 Lactamase_B superfamily 278257 281050 + Lactamase_B superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7448890 Thaps12061.4, Thaps12061.2, Thaps12061.3, Thaps12061.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0228

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0165
 0.36

Most Highly Correlated Transcripts

25689

hypothetical protein
0.8853

32374

TPR
0.855

bd692

(bd692) NA
0.852

bd1946

(bd1946) NA
0.8479

33425

BMS1
0.8448

21222

SrmB
0.841

15992

COG0820
0.8392

21082

Cupin_8 superfamily
0.839

2921

RRM_SF
0.8326

29018

NMD3
0.8315

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Lactamase_B superfamily Metallo-beta-lactamase superfamily; Metallo-beta-lactamase superfamily. - 210.15 1.89E-61 379 - 802 superfamily 260426

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_16162 PHATRDRAFT_16162 159589 Not available 456773 Not available Not available Not available

KEGG

KEGG description KEGG Pathway
RNA transport map03013

GO Terms

GO:0042781 -

GO:0042781

3'-tRNA processing endoribonuclease activity

Details: 
Catalysis of the endonucleolytic cleavage of RNA, removing extra 3' nucleotides from tRNA precursor, generating 3' termini of tRNAs. A 3'-hydroxy group is left at the tRNA terminus and a 5'-phosphoryl group is left at the trailer molecule.
GO Category: 
MF

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