16926 UFD1
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
16926 chr_3 UFD1 2137468 2138745 + UFD1

Synonyms

NCBI ID Ensembl Genomes exon ID
7443789 Thaps16926.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0454

Most Highly Correlated Transcripts

33092

RINGv superfamily
0.8484

bd388

(bd388) COG3899
0.844

263124

RRM_snRNP70
0.8013

17314

Solute_trans_a superfamily
0.7722

31737

fabG
0.7655

42447

RRM_SF superfamily
0.7605

38768

SANT
0.7604

264326

probable cytochrome P450
0.7523

17468

CK_II_beta
0.7483

15972

RRM2_SF3B4
0.7482

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
UFD1 superfamily Ubiquitin fusion degradation protein UFD1; Post-translational ubiquitin-protein conjugates are... - 278.673 2.98E-92 17 - 189 superfamily 251761
UFD1 superfamily Ubiquitin fusion degradation protein UFD1; Post-translational ubiquitin-protein conjugates are... - 278.673 2.98E-92 17 - 189 superfamily 251761

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_10963 PHATRDRAFT_10963 195024 67838 467386 Cre14.g613350.t1.1 AT2G21270.2 358674

KEGG

KEGG description KEGG Pathway
Protein processing in endoplasmic reticulum map04141

GO Terms

GO:0006511 -

GO:0006511

ubiquitin-dependent protein catabolic process

Details: 
The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin group, or multiple ubiquitin groups, to the protein.
GO Category: 
BP

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