29183 PRK12344
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
29183 chr_8 PRK12344 746965 748785 + PRK12344

Synonyms

NCBI ID Ensembl Genomes exon ID
7452830 Thaps29183.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0289

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0013
 0.47

Most Highly Correlated Transcripts

14708

DRE_TIM_metallolyase superfamily
0.9022

12899

AAA
0.8724

21875

zf-CW
0.8703

bd1944

(bd1944) Glyco_hydro_79n superfamily
0.87

22293

PLN00178
0.8641

268443

SAICAR_synt_Sc
0.8638

37374

PseudoU_synth superfamily
0.8586

270013

DNA_pol_A_plastid_like
0.8577

36007

Aldolase_II superfamily
0.8546

21149

hypothetical protein
0.8474

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
DRE_TIM_metallolyase superfamily DRE-TIM metallolyase superfamily; The DRE-TIM metallolyase superfamily includes 2-isopropylmalate... - 398.366 1.29E-135 1 - 282 superfamily 267315
LeuA_dimer LeuA allosteric (dimerisation) domain; This is the C-terminal regulatory (R) domain of alpha-... cl07212 89.4658 5.40E-21 381 - 553 specific 214910
LeuA_dimer superfamily LeuA allosteric (dimerization) domain; This is the C-terminal regulatory (R) domain of alpha-... - 89.4658 5.40E-21 381 - 553 superfamily 263229
PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional - 714.556 0 2 - 554 multi-dom 237068

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_38362 PHATRDRAFT_38362 157093 189706 231620 Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Biosynthesis of secondary metabolites map01110

GO Terms

GO:0003824 GO:0019752 GO:0046912 GO:0003852 -

GO:0003824

catalytic activity

Details: 
Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
GO Category: 
MF

GO:0019752

carboxylic acid metabolic process

Details: 
The chemical reactions and pathways involving carboxylic acids, any organic acid containing one or more carboxyl (COOH) groups or anions (COO-).
GO Category: 
BP

GO:0046912

transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer

Details: 
Catalysis of the transfer of an acyl group from one compound (donor) to another (acceptor), with the acyl group being converted into alkyl on transfer.
GO Category: 
MF

GO:0003852

2-isopropylmalate synthase activity

Details: 
Catalysis of the reaction: 3-methyl-2-oxobutanoate + acetyl-CoA + H(2)O = (2S)-2-isopropylmalate + CoA + H(+).
GO Category: 
MF

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