40233 (Tp_CSF3) CSP_CDSThalassiosira pseudonana | Diatom Portal

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Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
40233	chr_4	(Tp_CSF3) CSP_CDS	566940	567717	-	CSP_CDS

Synonyms

NCBI ID	Ensembl Genomes exon ID
7447471	Thaps40233.2, Thaps40233.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0291

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0279	0.39	0.0000044 0.31

Most Highly Correlated Transcripts

21710 Pho88 superfamily 0.881	21258 DUF3523 0.8806	bd1515 (bd1515) Adenylsuccinate_lyase_2 0.8805	105 PTZ00248 0.8786	22770 PLN02908 0.867	270365 hypothetical protein 0.8642
42612 pdxS 0.863	42226 PLN03233 0.8594	31809 adk 0.8594	36007 Aldolase_II superfamily 0.8591

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
CSP_CDS		Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in eukaryotes,...	cl09927	91.101	9.12E-25	42 - 107	specific	239905
S1_like superfamily		S1_like: Ribosomal protein S1-like RNA-binding domain. Found in a wide variety of RNA-associated...	-	91.101	9.12E-25	42 - 107	superfamily	263921

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	213324	306266	78118	Cre06.g268600.t1.2	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0003677 GO:0006355 GO:0003676 -

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